"TOPP For Advanced Users" section requires clarity

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Open greengypsy opened 2 years ago

greengypsy commented 2 years ago

Currently, this section is very difficult to understand and in some cases, grammatically incorrect. I have placed it in a new location in an experimental branch [here]()https://greengypsy-staging-openms.readthedocs.io/en/restructuring-test/docs/tutorials/TOPP/topp-for-advanced-users.html.

For starters, I think we need to explain concepts like "search engine adapters", "FASTA files".

jpfeuffer commented 2 years ago

"Using external tools in workflows" is TOPPAS-only, so needs to be moved to a TOPPAS section if there still is any.