OpenMS Documentation

This repository is the home for OpenMS documentation. OpenMS documentation is categorised as per:

• Supported libraries, tools, packages.
• Users who prefer GUI.
• Users who prefer working with code.
• Examples and tutorials of working with OpenMS.
• Adding functionalities to OpenMS.
• Extensibility of OpenMS.
• Developer and contributor documentation.
• Workshop/Training tutorial.
• Quick start user and developer guides.
• Most efficient and user centric OpenMS tools.
• and a lot of other interesting reads with sample data!

The documentation can be browsed online and offline.

Browse OpenMS documentation online

1. https://openms.readthedocs.io/en/develop
2. https://openms.readthedocs.io/en/latest

develop denotes the developing version of OpenMS documentation. latest corresponds to the OpenMS stable release documentation.

Browse OpenMS documentation offline

1. Download latest PDF.
2. Download latest HTMLZip.
3. Download develop PDF.
4. Download develop HTMLZip.

Build OpenMS Docs locally

In the root directory, run

pip3 install -r requirements.txt

to install dependencies. It is suggested to create a virtual environment, for more information read venv docs.

As the next step, there are a few options to build OpenMS/OpenMS-docs locally:

1. Run make html in root directory.
2. Run sphinx-build -a docs /tmp/rtd to build all files.
3. Run sphinx-build docs/ /tmp/rtd to build changed files.

Now, open index.html file to view the changes or output of OpenMS ReadTheDocs documentation.

Contributing to OpenMS Docs

Please read our contributing guidelines, before starting with contributing to OpenMS Documentation.

Let us know what you would like to read in OpenMS documentation using GitHub issues!