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OpenMendel
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SnpArrays.jl
Compressed storage for SNP data
https://openmendel.github.io/SnpArrays.jl/latest
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bug in filter function
#39
Hua-Zhou
closed
5 years ago
0
Hardy-Weinberg equilibrium test
#38
Hua-Zhou
closed
5 years ago
0
updated snp_info reader
#37
kose-y
closed
5 years ago
1
unsafe creation of SnpData from Plink file
#36
Hua-Zhou
closed
5 years ago
1
Filter for SnpData
#35
kose-y
closed
5 years ago
2
tests for subarrays
#34
kose-y
closed
5 years ago
2
…
#33
Hua-Zhou
closed
5 years ago
2
Documentation on SnpData and linear algebra on a subarray of SnpArray
#32
kose-y
closed
5 years ago
0
more test/documentation: SnpData, linear algebra and convert of subarray
#31
kose-y
closed
5 years ago
0
Juliav0.7 snpdata
#30
kose-y
closed
5 years ago
0
Further subsetting/splitting/merging support
#29
kose-y
closed
4 years ago
1
Generalization of linear algebra-related routines
#28
kose-y
closed
5 years ago
1
σinv calculated wrong in SnpBitMatrix
#27
biona001
closed
5 years ago
4
Best way to perform linear algebra on a subset of SnpArray v0.7?
#26
biona001
opened
5 years ago
1
added snpdata, splitting and merging
#25
kose-y
closed
5 years ago
5
need a utility function to split a Plink binary data set into smaller ones according to chromosome and vice versa (combine)
#24
Hua-Zhou
opened
5 years ago
0
Cannot use `view()` on `A_mul_B!`
#23
biona001
opened
6 years ago
0
Parallelize linear algebra routines for SnpArray
#22
biona001
closed
6 years ago
0
Split copy! method in two to avoid type instability in hot loop
#21
andreasnoack
closed
6 years ago
3
memory leak when copying/converting SnpArray to matrix
#20
Hua-Zhou
closed
6 years ago
2
Feature request: calculate GRM within pedigrees
#19
Hua-Zhou
opened
7 years ago
0
Bug: maf_threshold in grm() is hard coded to 0.01
#18
Hua-Zhou
closed
7 years ago
0
Grm filter maf by default
#17
Hua-Zhou
closed
7 years ago
3
add capability to read v0.99 BED or prior to v0.99 version BED
#16
Hua-Zhou
closed
7 years ago
2
Plink BED files prior to v1.0
#15
Hua-Zhou
closed
7 years ago
0
filter genotypes in `grm` function by default
#14
Hua-Zhou
closed
7 years ago
0
nmap unaligned pointers in julia 0.7
#13
msuchard
opened
7 years ago
0
Migrate to 0.6
#12
kindlychung
closed
7 years ago
3
could not import IterativeSolvers.MatrixFcn into SnpArrays
#11
Hua-Zhou
closed
7 years ago
1
Convert SnpArray to NullableArray
#10
Hua-Zhou
opened
7 years ago
0
Travis failure on Julia v0.5 with linux/osx
#9
Hua-Zhou
opened
7 years ago
0
Add filter() for SnpData
#8
alanderos91
closed
7 years ago
3
filtering for the SnpData type
#7
Hua-Zhou
closed
7 years ago
1
Pkg.clone format listed requires public/private key
#6
jcpapp
closed
7 years ago
1
*.bed files are opened RW for reading.
#5
msuchard
closed
7 years ago
2
Edge case for function summarize()
#4
ericsobel
closed
8 years ago
4
default convert to Float64 returns backwards genotypes under additive model?
#3
klkeys
closed
8 years ago
7
no A_mul_B!, Ac_mul_B! routines
#2
klkeys
opened
8 years ago
4
Enable travis builds
#1
joshday
closed
8 years ago
3
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