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OpenMendel
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SnpArrays.jl
Compressed storage for SNP data
https://openmendel.github.io/SnpArrays.jl/latest
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add @avx back and some extra tests
#89
biona001
closed
3 years ago
3
Properly display missing values for SnpLinAlg when impute=true
#88
biona001
closed
3 years ago
2
SnpLinAlg broken for some data on master
#87
biona001
closed
3 years ago
2
Drop dependency on GeneticVariation.jl in favor of VariantCallFormat.jl
#86
biona001
closed
3 years ago
2
how to subset the bed file based on individuals ID in Jupyter
#85
Uljibuh
closed
3 years ago
3
DataFrame! -> DataFrame
#84
biona001
closed
3 years ago
4
Breaking change from VectorizationBase.jl
#83
kose-y
closed
3 years ago
10
Copyto
#82
biona001
closed
3 years ago
3
feature request: copyto!(v, s) for SnpBitMatrix and SnpLinAlg
#81
biona001
closed
3 years ago
8
close vcf readers
#80
biona001
closed
3 years ago
3
Convert SnpArray into matrix{Int} doesn't obey conversion convention
#79
biona001
opened
3 years ago
5
Cannot update SnpArrays
#78
biona001
closed
4 years ago
3
Kinship pruning
#77
kose-y
closed
4 years ago
3
Admixture-King
#76
Hua-Zhou
closed
4 years ago
2
vcf2plink
#75
kose-y
closed
4 years ago
1
Cleanup repetitive code
#74
kose-y
closed
4 years ago
2
linear algebra code cleanup
#73
kose-y
closed
4 years ago
0
Multithreading for mul!
#72
kose-y
closed
4 years ago
2
Add KING methods for genetic relationship matrix calculation
#71
Hua-Zhou
opened
4 years ago
4
Tiling A^T y
#70
kose-y
closed
4 years ago
1
Multithreading support for linear algebra
#69
kose-y
closed
4 years ago
2
Mean imputation
#68
kose-y
closed
4 years ago
1
Mean imputation for linear algebra?
#67
kose-y
closed
4 years ago
4
LD Pruning of SNPs
#66
kose-y
opened
4 years ago
4
Improve Linear Algebra Further
#65
kose-y
closed
4 years ago
1
Add CI test for GPU linear algebra
#64
kose-y
opened
4 years ago
2
SnpBitMatrix-based GPU acceleration
#63
kose-y
closed
4 years ago
1
Save SnpBitMatrix as a separate file
#62
kose-y
closed
4 years ago
1
use avx properly for SnpLinAlg
#61
kose-y
closed
4 years ago
2
faster hcat
#60
kose-y
closed
4 years ago
2
Improve linear algebra with SnpLinAlg
#59
kose-y
closed
4 years ago
0
Prune a kinship matrix to eliminate high relatedness
#58
Hua-Zhou
closed
4 years ago
10
Improve linear algebra
#57
kose-y
closed
4 years ago
10
Improve linear algebra
#56
kose-y
closed
4 years ago
6
Travis: Allow failures on Windows
#55
kose-y
closed
4 years ago
4
Change dependency on `Distribitions.jl` to dependency on `SpecialFunctions.jl`
#54
kose-y
closed
4 years ago
3
Is there a DOI for this package?
#53
biona001
closed
4 years ago
1
reduce size of test "split-merge-readwrite"
#52
kose-y
closed
4 years ago
1
linear algebra directly from an `SnpArray`
#51
kose-y
closed
4 years ago
8
Include random string in default filenames for `filter`, `hcat`, `vcat`, `hvcat` (?)
#50
kose-y
opened
4 years ago
0
Improve performance of `hcat`
#49
kose-y
closed
4 years ago
0
Update deprecated dataframe syntax for `SnpData`
#48
kose-y
closed
4 years ago
0
minor bug when filtering on snpdata with integer indices
#47
kose-y
closed
4 years ago
2
Problem adding SnpArrays with Julia 1.2
#46
richgill8
opened
4 years ago
2
`SnpData` updates and `reorder!`
#45
kose-y
closed
4 years ago
5
sort by survival time (or reordering subjects by a set of indices)
#44
kose-y
closed
4 years ago
2
GPU implementation of X' * y
#43
kose-y
closed
4 years ago
5
Concatenation: `vcat`, `hcat`, `hvcat`
#42
kose-y
closed
5 years ago
1
Repeatedly filtering Plink files based on integer indices
#41
kose-y
opened
5 years ago
2
move positional arguments in filter to keyword arguments
#40
Hua-Zhou
opened
5 years ago
0
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