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OpenOmics
/
genome-seek
Clinical Whole Genome and Exome Sequencing Pipeline
https://openomics.github.io/genome-seek/
MIT License
18
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11
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Benchmark new GATK germline sub workflow for accuracy and precision
#21
skchronicles
closed
2 months ago
1
Add GATK best practices sub-workflow for calling short germline variants
#20
skchronicles
closed
2 months ago
1
Calling only -> no alignment
#19
dansteiert
opened
6 months ago
2
Updates to docs for WES updates
#18
skchronicles
closed
7 months ago
0
Feat: adding whole exome sequencing (WES) pipeline
#17
skchronicles
closed
7 months ago
0
Add option to run pipeline in WES-mode
#16
skchronicles
closed
7 months ago
0
Changes to calling and merging somatic variants
#15
skchronicles
closed
9 months ago
1
genome-seek cache error
#14
yingchen69
opened
1 year ago
6
TODO: v1.0.0 Release
#13
skchronicles
opened
2 years ago
1
Create somatic pipeline
#11
skchronicles
closed
9 months ago
1
Add CI workflow for testing changes
#10
skchronicles
closed
2 years ago
1
Benchmarking germline pipeline for accuracy and precision after completion
#9
skchronicles
closed
2 years ago
2
Create documentation
#8
skchronicles
closed
2 years ago
1
Build docker image for OpenCRAVAT due to bug in mergesqlite sub command
#7
skchronicles
closed
2 years ago
1
Add optional steps to skip qc and only call variants
#6
skchronicles
closed
2 years ago
1
Add optional SV calling steps
#5
skchronicles
closed
2 years ago
1
Add optional CNV calling steps
#4
skchronicles
closed
2 years ago
1
Create germline pipeline
#3
skchronicles
closed
2 years ago
1
Create a new entry point to pipeline
#2
skchronicles
closed
2 years ago
1
Create basic scaffold for project
#1
skchronicles
closed
2 years ago
1