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This Python package is automatically generated by the Swagger Codegen project:
Python 2.7 and 3.4+
If the python package is hosted on Github, you can install directly from Github
pip install git+https://github.com/OpenSILEX/opensilexClientToolsPython.git@1.3.2(you may need to run pip with root permission: sudo pip install git+https://github.com/OpenSILEX/opensilexClientToolsPython.git@1.3.2)
Then import the package:
import opensilexClientToolsPython Install via Setuptools.
python setup.py install --user(or sudo python setup.py install to install the package for all users)
Then import the package:
import opensilexClientToolsPythonPlease follow the installation procedure and then run the following:
import opensilexClientToolsPython
from pprint import pprint
# usage of a created instance of the API class
pythonClient = opensilexClientToolsPython.ApiClient() # TO have more detail on the execution of the requests you can pass verbose=True
# Don't forget to change the host to your instance and use a password
# and identifier from an account that exists on said instance
pythonClient.connect_to_opensilex_ws(
identifier="guest@opensilex.org",
password="guest",
host="https://localhost/rest"
)
anotation_api_instance = opensilexClientToolsPython.AnnotationsApi(pythonClient)
target = "http://www.opensilex.org/demo/2018/o18000076" # str | Target URI (optional)
try:
# Count annotations
api_response = anotation_api_instance.count_annotations(target=target)
pprint(api_response)
except opensilexClientToolsPython.rest.ApiException as e:
print("Api Exception when calling AnnotationsApi->count_annotations: %s\n" % e)
# Other more specific exceptions inherit from this general class :
# - ApiDuplicateException for duplicated data on POST
# - ApiURIExistsException for URI already exists on POST
# - ApiURINotFoundException for URI not found on GET
# These can be found in rest.py
except Exception as e:
print("Exception when calling AnnotationsApi->count_annotations: %s\n" % e)All URIs are relative to **
| Class | Method | HTTP request | Description |
|---|---|---|---|
| AnnotationsApi | count_annotations | GET /core/annotations/count | Count annotations |
| AnnotationsApi | create_annotation | POST /core/annotations | Create an annotation |
| AnnotationsApi | delete_annotation | DELETE /core/annotations/{uri} | Delete an annotation |
| AnnotationsApi | get_annotation | GET /core/annotations/{uri} | Get an annotation |
| AnnotationsApi | search_annotations | GET /core/annotations | Search annotations |
| AnnotationsApi | search_motivations | GET /core/annotations/motivations | Search motivations |
| AnnotationsApi | update_annotation | PUT /core/annotations | Update an annotation |
| AreaApi | create_area | POST /core/area | Add an area |
| AreaApi | delete_area | DELETE /core/area/{uri} | Delete an area |
| AreaApi | export_geospatial | POST /core/area/export_geospatial | Export a given list of areas URIs to shapefile |
| AreaApi | get_by_uri | GET /core/area/{uri} | Get an area |
| AreaApi | search_intersects | POST /core/area/intersects | Get area whose geometry corresponds to the Intersections |
| AreaApi | update_area | PUT /core/area | Update an area |
| AuthenticationApi | authenticate | POST /security/authenticate | Authenticate a user and return an access token |
| AuthenticationApi | authenticate_open_id | GET /security/openid | Authenticate a user and return an access token |
| AuthenticationApi | authenticate_saml | GET /security/saml | Authenticate a user and return an access token from SAML response |
| AuthenticationApi | forgot_password | POST /security/forgot-password | Send an e-mail confirmation |
| AuthenticationApi | get_credentials_groups | GET /security/credentials | Get list of existing credentials indexed by Swagger @API concepts in the application |
| AuthenticationApi | logout | DELETE /security/logout | Logout by discarding a user token |
| AuthenticationApi | renew_password | PUT /security/renew-password | Update user password |
| AuthenticationApi | renew_token | PUT /security/renew-token | Send back a new token if the provided one is still valid |
| BRAPIApi | get_calls | GET /brapi/v1/calls | Check the available BrAPI calls |
| BRAPIApi | get_germplasm_by_search | GET /brapi/v1/germplasm | Submit a search request for germplasm (type accession in OpenSILEX |
| BRAPIApi | get_observation_units | GET /brapi/v1/studies/{studyDbId}/observationunits | List all the observation units measured in the study. |
| BRAPIApi | get_observation_variables | GET /brapi/v1/studies/{studyDbId}/observationvariables | List all the observation variables measured in the study. |
| BRAPIApi | get_observations | GET /brapi/v1/studies/{studyDbId}/observations | Get the observations associated to a specific study |
| BRAPIApi | get_studies | GET /brapi/v1/studies | Retrieve studies information |
| BRAPIApi | get_studies_search | GET /brapi/v1/studies-search | Retrieve studies information |
| BRAPIApi | get_study_details | GET /brapi/v1/studies/{studyDbId} | Retrieve study details |
| BRAPIApi | get_variable_details | GET /brapi/v1/variables/{observationVariableDbId} | Retrieve variable details by id |
| BRAPIApi | get_variables_list | GET /brapi/v1/variables | BrAPIv1CallDTO to retrieve a list of observationVariables available in the system |
| DataApi | add_list_data | POST /core/data | Add data |
| DataApi | count_data | POST /core/data/count | Count data |
| DataApi | count_datafiles | GET /core/datafiles/count | Count datafiles |
| DataApi | create_provenance | POST /core/provenances | Add a provenance |
| DataApi | delete_data | DELETE /core/data/{uri} | Delete data |
| DataApi | delete_data_on_search | DELETE /core/data | Delete data on criteria |
| DataApi | delete_provenance | DELETE /core/provenances/{uri} | Delete a provenance that doesn't describe data |
| DataApi | export_data | GET /core/data/export | Export data |
| DataApi | export_data1 | POST /core/data/export | Export data |
| DataApi | get_data | GET /core/data/{uri} | Get data |
| DataApi | get_data_file | GET /core/datafiles/{uri} | Get a data file |
| DataApi | get_data_file_description | GET /core/datafiles/{uri}/description | Get a data file description |
| DataApi | get_data_file_descriptions_by_search | GET /core/datafiles | Search data files |
| DataApi | get_data_file_descriptions_by_targets | POST /core/datafiles/by_targets | Search data files for a large list of targets |
| DataApi | get_data_list_by_targets | POST /core/data/by_targets | Search data for a large list of targets |
| DataApi | get_data_series_by_facility | GET /core/data/data_serie/facility | Get all data series associated with a facility |
| DataApi | get_datafiles_provenances | GET /core/datafiles/provenances | Search provenances linked to datafiles |
| DataApi | get_datafiles_provenances_by_targets | POST /core/datafiles/provenances/by_targets | Search provenances linked to datafiles for a large list of targets |
| DataApi | get_mathematical_operators | GET /core/data/mathematicalOperators | Get mathematical operators |
| DataApi | get_pictures_thumbnails | GET /core/datafiles/{uri}/thumbnail | Get a picture thumbnail |
| DataApi | get_provenance | GET /core/provenances/{uri} | Get a provenance |
| DataApi | get_provenances_by_ur_is | GET /core/provenances/by_uris | Get a list of provenances by their URIs |
| DataApi | get_used_provenances | GET /core/data/provenances | Search provenances linked to data |
| DataApi | get_used_provenances_by_targets | POST /core/data/provenances/by_targets | Search provenances linked to data for a large list of targets |
| DataApi | get_used_variables | GET /core/data/variables | Get variables linked to data |
| DataApi | import_csv_data | POST /core/data/import | Import a CSV file for the given provenanceURI |
| DataApi | post_data_file | POST /core/datafiles | Add a data file |
| DataApi | post_data_file_paths | POST /core/datafiles/description | Describe datafiles and give their relative paths in the configured storage system. In the case of already stored datafiles. |
| DataApi | search_data_list | GET /core/data | Search data |
| DataApi | search_data_list_by_targets | POST /core/data/search | Search data for a large list of targets |
| DataApi | search_provenance | GET /core/provenances | Get provenances |
| DataApi | update | PUT /core/data | Update data |
| DataApi | update_confidence | PUT /core/data/{uri}/confidence | Update confidence index |
| DataApi | update_provenance | PUT /core/provenances | Update a provenance |
| DataApi | validate_csv | POST /core/data/import_validation | Import a CSV file for the given provenanceURI. |
| DataverseApi | available_dataset_languages | GET /dataverse/datasetLanguages | Get the available dataset languages |
| DataverseApi | available_dataset_metadata_languages | GET /dataverse/datasetMetadataLanguages | Get the available dataset metadata languages |
| DataverseApi | create_dataset | POST /dataverse | Create experiment as a Dataset |
| DataverseApi | recherche_data_gouv_base_path | GET /dataverse/RechercheDataGouvBasePath | Get the Recherche Data Gouv url from the instance configuration |
| DevicesApi | count_device_data | GET /core/devices/{uri}/data/count | Count device data |
| DevicesApi | create_device | POST /core/devices | Create a device |
| DevicesApi | delete_device | DELETE /core/devices/{uri} | Delete a device |
| DevicesApi | export_devices | GET /core/devices/export | export devices |
| DevicesApi | export_geospatial1 | POST /core/devices/export_geospatial | Export a given list of devices URIs to shapefile |
| DevicesApi | export_list | POST /core/devices/export_by_uris | export devices |
| DevicesApi | get_device | GET /core/devices/{uri} | Get device detail |
| DevicesApi | get_device_by_uris | GET /core/devices/by_uris | Get devices by uris |
| DevicesApi | get_device_data_files_provenances | GET /core/devices/{uri}/datafiles/provenances | Get provenances of datafiles linked to this device |
| DevicesApi | get_device_data_provenances | GET /core/devices/{uri}/data/provenances | Get provenances of data that have been measured on this device |
| DevicesApi | get_device_variables | GET /core/devices/{uri}/variables | Get variables linked to the device |
| DevicesApi | get_devices_by_facility | GET /core/devices/{uri}/facility | Get devices by facility |
| DevicesApi | import_csv | POST /core/devices/import | Import a CSV file with one device per line |
| DevicesApi | search_device_data | GET /core/devices/{uri}/data | Search device data |
| DevicesApi | search_device_datafiles | GET /core/devices/{uri}/datafiles | Search device datafiles descriptions |
| DevicesApi | search_devices | GET /core/devices | Search devices |
| DevicesApi | update_device | PUT /core/devices | Update a device |
| DevicesApi | validate_csv1 | POST /core/devices/import_validation | Validate the import of a CSV file with one device per line |
| DocumentsApi | count_documents | GET /core/documents/count | Count documents |
| DocumentsApi | create_document | POST /core/documents | Add a document |
| DocumentsApi | delete_document | DELETE /core/documents/{uri} | Delete a document |
| DocumentsApi | get_document_file | GET /core/documents/{uri} | Get document |
| DocumentsApi | get_document_metadata | GET /core/documents/{uri}/description | Get document's description |
| DocumentsApi | search_documents | GET /core/documents | Search documents |
| DocumentsApi | update_document | PUT /core/documents | Update document's description |
| EventsApi | count_events | GET /core/events/count | Count events |
| EventsApi | create_events | POST /core/events | Create a list of event |
| EventsApi | create_moves | POST /core/events/moves | Create a list of move event |
| EventsApi | delete_event | DELETE /core/events/{uri} | Delete an event |
| EventsApi | delete_move_event | DELETE /core/events/moves/{uri} | Delete a move event |
| EventsApi | get_event | GET /core/events/{uri} | Get an event |
| EventsApi | get_event_details | GET /core/events/{uri}/details | Get an event with all it's properties |
| EventsApi | get_move_event | GET /core/events/moves/{uri} | Get a move with all it's properties |
| EventsApi | get_move_event_by_uris | GET /core/events/moves/by_uris | Get a list of moves with all positional information |
| EventsApi | import_event_csv | POST /core/events/import | Import a CSV file with one move and one target per line |
| EventsApi | import_move_csv | POST /core/events/moves/import | Import a CSV file with one move and one target per line |
| EventsApi | search_events | GET /core/events | Search events |
| EventsApi | update_event | PUT /core/events | Update an event |
| EventsApi | update_move_event | PUT /core/events/moves | Update a move event |
| EventsApi | validate_event_csv | POST /core/events/import_validation | Check a CSV file with one move and one target per line |
| EventsApi | validate_move_csv | POST /core/events/moves/import_validation | Check a CSV file with one move and one target per line |
| ExperimentsApi | create_experiment | POST /core/experiments | Add an experiment |
| ExperimentsApi | delete_experiment | DELETE /core/experiments/{uri} | Delete an experiment |
| ExperimentsApi | export_experiment_data_list | GET /core/experiments/{uri}/data/export | export experiment data |
| ExperimentsApi | get_available_facilities | GET /core/experiments/{uri}/available_facilities | Get facilities available for an experiment |
| ExperimentsApi | get_available_factors | GET /core/experiments/{uri}/factors | Get factors with their levels associated to an experiment |
| ExperimentsApi | get_available_species | GET /core/experiments/{uri}/species | Get species present in an experiment |
| ExperimentsApi | get_experiment | GET /core/experiments/{uri} | Get an experiment |
| ExperimentsApi | get_experiments_by_ur_is | GET /core/experiments/by_uris | Get experiments URIs |
| ExperimentsApi | get_used_variables1 | GET /core/experiments/{uri}/variables | Get variables involved in an experiment |
| ExperimentsApi | import_csv_data1 | POST /core/experiments/{uri}/data/import | Import a CSV file for the given experiment URI and scientific object type. |
| ExperimentsApi | search_experiment_data_list | GET /core/experiments/{uri}/data | Search data |
| ExperimentsApi | search_experiment_provenances | GET /core/experiments/{uri}/provenances | Get provenances involved in an experiment |
| ExperimentsApi | search_experiments | GET /core/experiments | Search experiments |
| ExperimentsApi | update_experiment | PUT /core/experiments | Update an experiment |
| ExperimentsApi | validate_csv2 | POST /core/experiments/{uri}/data/import_validation | Import a CSV file for the given experiment URI and scientific object type. |
| FactorsApi | count_factors | GET /core/experiments/factors/count | Count factors |
| FactorsApi | create_factor | POST /core/experiments/factors | Create a factor |
| FactorsApi | delete_factor | DELETE /core/experiments/factors/{uri} | Delete a factor |
| FactorsApi | delete_factor_level | DELETE /core/experiments/factors/levels/{uri} | Delete a factor level |
| FactorsApi | get_factor_associated_experiments | GET /core/experiments/factors/{uri}/experiments | Get factor associated experiments |
| FactorsApi | get_factor_by_uri | GET /core/experiments/factors/{uri} | Get a factor |
| FactorsApi | get_factor_level | GET /core/experiments/factors/levels/{uri} | Get a factor level |
| FactorsApi | get_factor_level_detail | GET /core/experiments/factors/levels/{uri}/details | Get a factor level |
| FactorsApi | get_factor_levels | GET /core/experiments/factors/{uri}/levels | Get factor levels |
| FactorsApi | get_factors_by_ur_is | GET /core/experiments/factors/by_uris | Get a list of factors by their URIs |
| FactorsApi | search_categories | GET /core/experiments/factors/categories | Search categories |
| FactorsApi | search_factor_levels | GET /core/experiments/factors/factor_levels | Search factors levels |
| FactorsApi | search_factors | GET /core/experiments/factors | Search factors |
| FactorsApi | update_factor | PUT /core/experiments/factors | Update a factor |
| FaidareApi | get_calls1 | GET /faidare/v1/calls | Check the available faidare calls |
| FaidareApi | get_germplasms_by_search | GET /faidare/v1/germplasm | Submit a search request for germplasm |
| FaidareApi | get_locations_list | GET /faidare/v1/locations | Faidarev1CallDTO to retrieve a list of locations available in the system |
| FaidareApi | get_studies_list | GET /faidare/v1/studies | Retrieve studies information |
| FaidareApi | get_trials_list | GET /faidare/v1/trials | Faidarev1CallDTO to retrieve a list of trials available in the system |
| FaidareApi | get_variables_list1 | GET /faidare/v1/variables | Faidarev1CallDTO to retrieve a list of observationVariables available in the system |
| GermplasmApi | create_germplasm | POST /core/germplasm | Add a germplasm |
| GermplasmApi | create_germplasm_group | POST /core/germplasm_group | Add a germplasm group |
| GermplasmApi | delete_germplasm | DELETE /core/germplasm/{uri} | Delete a germplasm |
| GermplasmApi | delete_germplasm_group | DELETE /core/germplasm_group/{uri} | Delete a germplasm group |
| GermplasmApi | export_germplasm | POST /core/germplasm/export | export germplasm |
| GermplasmApi | get_germplasm | GET /core/germplasm/{uri} | Get a germplasm |
| GermplasmApi | get_germplasm_attribute_values | GET /core/germplasm/attributes/{attribute} | Get attribute values of all germplasm for a given attribute |
| GermplasmApi | get_germplasm_attributes | GET /core/germplasm/attributes | Get attributes of all germplasm |
| GermplasmApi | get_germplasm_experiments | GET /core/germplasm/{uri}/experiments | Get experiments where a germplasm has been used |
| GermplasmApi | get_germplasm_group | GET /core/germplasm_group/{uri} | Get a germplasm group |
| GermplasmApi | get_germplasm_group_by_ur_is | GET /core/germplasm_group/by-uris | Get germplasm groups by their URIs |
| GermplasmApi | get_germplasm_group_content | GET /core/germplasm_group/{uri}/germplasm | Get a germplasm group's germplasm, paginated |
| GermplasmApi | get_germplasm_group_with_germplasms | GET /core/germplasm_group/with-germplasm/{uri} | Get a germplasm group with nested germplasm details |
| GermplasmApi | get_germplasms_by_uri | POST /core/germplasm/by_uris | Get a list of germplasms by their URIs |
| GermplasmApi | search_germplasm | GET /core/germplasm | Search germplasm |
| GermplasmApi | search_germplasm_groups | POST /core/germplasm_group/search | Search germplasm groups |
| GermplasmApi | update_germplasm | PUT /core/germplasm | Update a germplasm |
| GermplasmApi | update_germplasm_group | PUT /core/germplasm_group | Update a germplasm group |
| MetricsApi | get_experiment_summary_history | GET /core/metrics/experiment/{uri} | Get an experiment summary history |
| MetricsApi | get_running_experiments_summary | GET /core/metrics/running_experiments | Get running experiments metrics |
| MetricsApi | get_system_metrics | GET /core/metrics/system | Get system metrics |
| MetricsApi | get_system_metrics_summary | GET /core/metrics/system/summary | Get system metrics summary |
| OntologyApi | add_class_property_restriction | POST /ontology/rdf_type_property_restriction | Add a rdf type property restriction |
| OntologyApi | check_ur_is_types | POST /ontology/check_rdf_types | Check the given rdf-types on the given uris |
| OntologyApi | create_property | POST /ontology/property | Create a RDF property |
| OntologyApi | delete_class_property_restriction | DELETE /ontology/rdf_type_property_restriction | Delete a rdf type property restriction |
| OntologyApi | delete_property | DELETE /ontology/property | Delete a property |
| OntologyApi | get_base_uri | GET /ontology/base_uri | Return base uri |
| OntologyApi | get_classes | GET /ontology/rdf_types | Return classes models definitions with properties for a list of rdf types |
| OntologyApi | get_data_properties | GET /ontology/data_properties | Search data properties tree |
| OntologyApi | get_linkable_properties | GET /ontology/linkable_properties | Search properties linkable to a domain |
| OntologyApi | get_name_space | GET /ontology/name_space | Return namespaces |
| OntologyApi | get_object_properties | GET /ontology/object_properties | Search object properties tree |
| OntologyApi | get_properties | GET /ontology/properties/{domain} | Search properties tree |
| OntologyApi | get_properties_by_domain_hierarchy_using_restrictions | GET /ontology/domain_hierarchy_restrictions | Get restrictions from some super-class domain to one lower down in the hierarchy, ordered by what domain they first appear in. |
| OntologyApi | get_property | GET /ontology/property | Return property model definition detail |
| OntologyApi | get_rdf_type | GET /ontology/rdf_type | Return class model definition with properties |
| OntologyApi | get_shared_resource_instances | GET /ontology/shared_resource_instances | Return the list of shared resource instances |
| OntologyApi | get_sub_classes_of | GET /ontology/subclasses_of | Search sub-classes tree of an RDF class |
| OntologyApi | get_sub_properties_of | GET /ontology/subproperties_of | Return property list from a parent property |
| OntologyApi | get_uri_label | GET /ontology/uri_label | Return associated rdfs:label of an uri if exists |
| OntologyApi | get_uri_labels_list | GET /ontology/uris_labels | Return associated rdfs:label of uris if they exist |
| OntologyApi | get_uri_types | GET /ontology/uri_types | Return all rdf types of an uri |
| OntologyApi | rename_uri | PUT /ontology/{uri}/rename | Rename all occurrences of the given URI |
| OntologyApi | search_sub_classes_of | GET /ontology/subclasses_of/search | Search sub-classes tree of an RDF class |
| OntologyApi | update_class_property_restriction | PUT /ontology/rdf_type_property_restriction | Update a rdf type property restriction |
| OntologyApi | update_property | PUT /ontology/property | Update a RDF property |
| OrganizationsApi | create_facility | POST /core/facilities | Create a facility |
| OrganizationsApi | create_organization | POST /core/organisations | Create an organisation |
| OrganizationsApi | create_site | POST /core/sites | Create a site |
| OrganizationsApi | delete_facility | DELETE /core/facilities/{uri} | Delete a facility |
| OrganizationsApi | delete_organization | DELETE /core/organisations/{uri} | Delete an organisation |
| OrganizationsApi | delete_site | DELETE /core/sites/{uri} | Delete a site |
| OrganizationsApi | get_all_facilities | GET /core/facilities/all_facilities | Get all facilities |
| OrganizationsApi | get_facilities_by_uri | GET /core/facilities/by_uris | Get facilities by their URIs |
| OrganizationsApi | get_facility | GET /core/facilities/{uri} | Get a facility |
| OrganizationsApi | get_organization | GET /core/organisations/{uri} | Get an organisation |
| OrganizationsApi | get_site | GET /core/sites/{uri} | Get a site |
| OrganizationsApi | get_sites_by_uri | GET /core/sites/by_uris | Get a list of sites |
| OrganizationsApi | minimal_search_facilities | GET /core/facilities/minimal_search | Search facilities returning minimal embedded information for better performance |
| OrganizationsApi | search_facilities | GET /core/facilities | Search facilities |
| OrganizationsApi | search_organizations | GET /core/organisations | Search organisations |
| OrganizationsApi | search_sites | GET /core/sites | Search all sites |
| OrganizationsApi | update_facility | PUT /core/facilities | Update a facility |
| OrganizationsApi | update_organization | PUT /core/organisations | Update an organisation |
| OrganizationsApi | update_site | PUT /core/sites | Update a site |
| PositionsApi | count_moves | GET /core/positions/count | Count moves |
| PositionsApi | get_position | GET /core/positions/{uri} | Get the position of an object |
| PositionsApi | search_geospatialized_position | POST /core/positions/geospatializedPosition | Search the last geospatialized position of a target for an experiment |
| PositionsApi | search_position_history | GET /core/positions/history | Search history of position of an object |
| ProjectsApi | create_project | POST /core/projects | Add a project |
| ProjectsApi | delete_project | DELETE /core/projects/{uri} | Delete a project |
| ProjectsApi | get_project | GET /core/projects/{uri} | Get a project |
| ProjectsApi | get_projects_by_uri | GET /core/projects/by_uris | Get projects by their URIs |
| ProjectsApi | search_projects | GET /core/projects | Search projects |
| ProjectsApi | update_project | PUT /core/projects | Update a project |
| ScientificObjectsApi | count_scientific_objects | GET /core/scientific_objects/count | Count scientific objects |
| ScientificObjectsApi | create_scientific_object | POST /core/scientific_objects | Create a scientific object for the given experiment |
| ScientificObjectsApi | delete_scientific_object | DELETE /core/scientific_objects/{uri} | Delete a scientific object |
| ScientificObjectsApi | export_csv | POST /core/scientific_objects/export | Export a given list of scientific object URIs to csv data file |
| ScientificObjectsApi | export_geospatial2 | POST /core/scientific_objects/export_geospatial | Export a given list of scientific object URIs to shapefile or geojson |
| ScientificObjectsApi | get_scientific_object_data_files_provenances | GET /core/scientific_objects/{uri}/datafiles/provenances | Get provenances of datafiles linked to this scientific object |
| ScientificObjectsApi | get_scientific_object_data_provenances | GET /core/scientific_objects/{uri}/data/provenances | Get provenances of data that have been measured on this scientific object |
| ScientificObjectsApi | get_scientific_object_detail | GET /core/scientific_objects/{uri} | Get scientific object detail |
| ScientificObjectsApi | get_scientific_object_detail_by_experiments | GET /core/scientific_objects/{uri}/experiments | Get scientific object detail for each experiments, a null value for experiment in response means a properties defined outside of any experiment (shared object). |
| ScientificObjectsApi | get_scientific_object_variables | GET /core/scientific_objects/{uri}/variables | Get variables measured on this scientific object |
| ScientificObjectsApi | get_scientific_objects_children | GET /core/scientific_objects/children | Get list of scientific object children |
| ScientificObjectsApi | get_scientific_objects_list_by_uris | POST /core/scientific_objects/by_uris | Get scientific objet list of a given experiment URI |
| ScientificObjectsApi | get_used_types | GET /core/scientific_objects/used_types | get used scientific object types |
| ScientificObjectsApi | import_csv1 | POST /core/scientific_objects/import | Import a CSV file for the given experiment URI and scientific object type. |
| ScientificObjectsApi | search_scientific_objects | GET /core/scientific_objects | Search list of scientific objects |
| ScientificObjectsApi | search_scientific_objects_with_geometry_list_by_uris | GET /core/scientific_objects/geometry | Get scientific objet list with geometry of a given experiment URI |
| ScientificObjectsApi | update_scientific_object | PUT /core/scientific_objects | Update a scientific object for the given experiment |
| ScientificObjectsApi | validate_csv3 | POST /core/scientific_objects/import_validation | Validate a CSV file for the given experiment URI and scientific object type. |
| SecurityApi | add_favorite | POST /security/accounts/favorites | Add a favorite |
| SecurityApi | add_favorite1 | POST /security/users/favorites | Add a favorite |
| SecurityApi | create_account | POST /security/accounts | Add an account |
| SecurityApi | create_group | POST /security/groups | Add a group |
| SecurityApi | create_person | POST /security/persons | Add a person |
| SecurityApi | create_profile | POST /security/profiles | Add a profile |
| SecurityApi | create_user | POST /security/users | Add a user |
| SecurityApi | delete_account | DELETE /security/accounts/{accountURI} | Delete an account |
| SecurityApi | delete_favorite | DELETE /security/accounts/favorites/{uriFavorite} | Delete a favorite |
| SecurityApi | delete_favorite1 | DELETE /security/users/favorites/{uriFavorite} | Delete a favorite |
| SecurityApi | delete_group | DELETE /security/groups/{uri} | Delete a group |
| SecurityApi | delete_profile | DELETE /security/profiles/{uri} | Delete a profile |
| SecurityApi | get_account | GET /security/accounts/{uri} | Get an account |
| SecurityApi | get_accounts_by_uri | GET /security/accounts/by_uris | Get accounts by their URIs |
| SecurityApi | get_all_profiles | GET /security/profiles/all | Get all profiles |
| SecurityApi | get_favorites | GET /security/accounts/favorites | Get list of favorites for a user |
| SecurityApi | get_favorites1 | GET /security/users/favorites | Get list of favorites for a user |
| SecurityApi | get_gdpr_file | GET /security/persons/GDPR | Get RGPD PDF |
| SecurityApi | get_group | GET /security/groups/{uri} | Get a group |
| SecurityApi | get_groups_by_uri | GET /security/groups/by_uris | Get groups by their URIs |
| SecurityApi | get_orcid_record | GET /security/persons/orcid_record | Get infos from an ORCID |
| SecurityApi | get_person | GET /security/persons/{uri} | Get a Person |
| SecurityApi | get_persons_by_uri | GET /security/persons/by_uris | Get persons by their URIs |
| SecurityApi | get_profile | GET /security/profiles/{uri} | Get a profile |
| SecurityApi | get_user | GET /security/users/{uri} | Get a user |
| SecurityApi | get_user_groups | GET /security/accounts/{uri}/groups | Get groups of a user |
| SecurityApi | get_user_groups1 | GET /security/users/{uri}/groups | Get groups of a user |
| SecurityApi | get_users_by_uri | GET /security/users/by_uris | Get users by their URIs |
| SecurityApi | search_accounts | GET /security/accounts | Search accounts |
| SecurityApi | search_groups | GET /security/groups | Search groups |
| SecurityApi | search_persons | GET /security/persons | Search persons |
| SecurityApi | search_profiles | GET /security/profiles | Search profiles |
| SecurityApi | search_users | GET /security/users | Search users |
| SecurityApi | update_account | PUT /security/accounts | Update an account |
| SecurityApi | update_group | PUT /security/groups | Update a group |
| SecurityApi | update_person | PUT /security/persons | Update a person |
| SecurityApi | update_profile | PUT /security/profiles | Update a profile |
| SecurityApi | update_user | PUT /security/users | Update a user |
| SpeciesApi | get_all_species | GET /core/species | get species (no pagination) |
| StapleAPIApi | export_ontology_file | GET /staple/ontology_file | Export ontology file for Staple API as turtle syntax |
| StapleAPIApi | get_resource_graphs | GET /staple/resource_graph | Get all graphs associated with resources |
| SystemApi | get_version_info | GET /core/system/info | get system information |
| VariablesApi | classic_export_variable_by_ur_is | POST /core/variables/export_classic_by_uris | export variable by list of uris |
| VariablesApi | copy_from_shared_resource_instance | POST /core/variables/copy_from_shared_resource_instance | Copy the selected variables from the shared resource instance |
| VariablesApi | create_characteristic | POST /core/characteristics | Add a characteristic |
| VariablesApi | create_entity | POST /core/entities | Add an entity |
| VariablesApi | create_interest_entity | POST /core/entities_of_interest | Add an entity of interest |
| VariablesApi | create_method | POST /core/methods | Add a method |
| VariablesApi | create_unit | POST /core/units | Add an unit |
| VariablesApi | create_variable | POST /core/variables | Add a variable |
| VariablesApi | create_variables_group | POST /core/variables_group | Add a variables group |
| VariablesApi | delete_characteristic | DELETE /core/characteristics/{uri} | Delete a characteristic |
| VariablesApi | delete_entity | DELETE /core/entities/{uri} | Delete an entity |
| VariablesApi | delete_interest_entity | DELETE /core/entities_of_interest/{uri} | Delete an entity of interest |
| VariablesApi | delete_method | DELETE /core/methods/{uri} | Delete a method |
| VariablesApi | delete_unit | DELETE /core/units/{uri} | Delete an unit |
| VariablesApi | delete_variable | DELETE /core/variables/{uri} | Delete a variable |
| VariablesApi | delete_variables_group | DELETE /core/variables_group/{uri} | Delete a variables group |
| VariablesApi | details_export_variable_by_ur_is | POST /core/variables/export_details_by_uris | export detailed variable by list of uris |
| VariablesApi | get_characteristic | GET /core/characteristics/{uri} | Get a characteristic |
| VariablesApi | get_characteristics_by_ur_is | GET /core/characteristics/by_uris | Get detailed characteristics by uris |
| VariablesApi | get_datatypes | GET /core/variables/datatypes | Get variables datatypes |
| VariablesApi | get_entities_by_ur_is | GET /core/entities/by_uris | Get detailed entities by uris |
| VariablesApi | get_entity | GET /core/entities/{uri} | Get an entity |
| VariablesApi | get_interest_entities_by_ur_is | GET /core/entities_of_interest/by_uris | Get detailed entities of interest by uris |
| VariablesApi | get_interest_entity | GET /core/entities_of_interest/{uri} | Get an entity of interest |
| VariablesApi | get_method | GET /core/methods/{uri} | Get a method |
| VariablesApi | get_methods_by_ur_is | GET /core/methods/by_uris | Get detailed methods by uris |
| VariablesApi | get_unit | GET /core/units/{uri} | Get an unit |
| VariablesApi | get_units_by_ur_is | GET /core/units/by_uris | Get detailed units by uris |
| VariablesApi | get_variable | GET /core/variables/{uri} | Get a variable |
| VariablesApi | get_variables_by_ur_is | GET /core/variables/by_uris | Get detailed variables by uris |
| VariablesApi | get_variables_group | GET /core/variables_group/{uri} | Get a variables group |
| VariablesApi | get_variables_group_by_ur_is | GET /core/variables_group/by_uris | Get variables groups by their URIs |
| VariablesApi | search_characteristics | GET /core/characteristics | Search characteristics by name |
| VariablesApi | search_entities | GET /core/entities | Search entities by name |
| VariablesApi | search_interest_entity | GET /core/entities_of_interest | Search entities of interest by name |
| VariablesApi | search_methods | GET /core/methods | Search methods by name |
| VariablesApi | search_units | GET /core/units | Search units by name |
| VariablesApi | search_variables | GET /core/variables | Search variables |
| VariablesApi | search_variables_details | GET /core/variables/details | Search detailed variables by name, long name, entity, characteristic, method or unit name |
| VariablesApi | search_variables_groups | GET /core/variables_group | Search variables groups |
| VariablesApi | update_characteristic | PUT /core/characteristics | Update a characteristic |
| VariablesApi | update_entity | PUT /core/entities | Update an entity |
| VariablesApi | update_interest_entity | PUT /core/entities_of_interest | Update an entity of interest |
| VariablesApi | update_method | PUT /core/methods | Update a method |
| VariablesApi | update_unit | PUT /core/units | Update an unit |
| VariablesApi | update_variable | PUT /core/variables | Update a variable |
| VariablesApi | update_variables_group | PUT /core/variables_group | Update a variables group |
| VueJsApi | get_config | GET /vuejs/config | Return the current configuration |
| VueJsApi | get_extension | GET /vuejs/extension/js/{module}.js | Return the front Vue JS extension file to include |
| VueJsApi | get_extension_style | GET /vuejs/extension/css/{module}.css | Return the front Vue JS extension css file to include |
| VueJsApi | get_theme_config | GET /vuejs/theme/{moduleId}/{themeId}/config | Return the front Vue JS theme configuration |
| VueJsApi | get_theme_css | GET /vuejs/theme/{moduleId}/{themeId}/style.css | Return the theme css file |
| VueJsApi | get_theme_resource | GET /vuejs/theme/{moduleId}/{themeId}/resource | Return the theme requested resource |
| VueJsApi | get_user_config | GET /vuejs/user_config | Return the user-specific configuration |
| VueJsOntologyExtensionApi | create_rdf_type | POST /vuejs/owl_extension/rdf_type | Create a custom class |
| VueJsOntologyExtensionApi | delete_rdf_type | DELETE /vuejs/owl_extension/rdf_type/{uri} | Delete a RDF type |
| VueJsOntologyExtensionApi | get_data_types1 | GET /vuejs/owl_extension/data_types | Return literal datatypes definition |
| VueJsOntologyExtensionApi | get_object_types | GET /vuejs/owl_extension/object_types | Return object types definition |
| VueJsOntologyExtensionApi | get_rdf_type1 | GET /vuejs/owl_extension/rdf_type | Return rdf type model definition with properties |
| VueJsOntologyExtensionApi | get_rdf_type_properties | GET /vuejs/owl_extension/rdf_type_properties | Return class model properties definitions |
| VueJsOntologyExtensionApi | get_rdf_types_parameters | GET /vuejs/owl_extension/rdf_types_parameters | Return RDF types parameters for Vue.js application |
| VueJsOntologyExtensionApi | set_rdf_type_properties_order | PUT /vuejs/owl_extension/properties_order | Define properties order |
| VueJsOntologyExtensionApi | update_rdf_type | PUT /vuejs/owl_extension/rdf_type | Update a custom class |
All endpoints do not require authorization.