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OpenTreeOfLife
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treemachine
Source tree graph database
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Update services
#185
josephwb
closed
9 years ago
2
web service to return subproblems IDs
#184
mtholder
opened
9 years ago
3
Never expose volatile node ids in the API
#183
jar398
closed
8 years ago
30
Eliminate "Supporting sources for node" messages from console log
#182
jar398
closed
8 years ago
1
Rootward synth
#181
chinchliff
closed
9 years ago
1
differing info in "supported by"
#180
mtholder
closed
8 years ago
9
Return 4xx/5xx status codes on bad service calls
#179
josephwb
closed
8 years ago
1
Ensure success of travis-ci, which is currently failing
#178
jar398
closed
8 years ago
1
Update README.md and modernize the treemachine wiki
#177
jar398
closed
8 years ago
1
Rootward synth
#176
josephwb
closed
9 years ago
1
LSIntersection appears to be called alot and is not efficient
#175
mtholder
closed
9 years ago
5
troubling comment
#174
mtholder
closed
8 years ago
1
the JadeNodes built up in populateTaxonomyGraphNodesMap seem to have no effects
#173
mtholder
closed
8 years ago
0
possible bug in creating `bipartsByTreeNoDuplicates`
#172
mtholder
closed
8 years ago
1
Update arguson
#171
josephwb
closed
9 years ago
2
Retire return source tree service?
#170
josephwb
closed
8 years ago
5
Is there a problem with hashCode?
#169
chinchliff
closed
8 years ago
0
incertae sedis erroneouly retained in synthetic tree
#168
jar398
closed
9 years ago
4
Api stuff
#167
josephwb
closed
9 years ago
2
Mapping tips to deepest nodes can cause taxonomy to override phylogeny
#166
snacktavish
closed
9 years ago
8
Reduce logging
#165
josephwb
closed
9 years ago
5
node lica problem
#164
blackrim
closed
9 years ago
2
Subtree methods need to return source references
#163
jar398
closed
8 years ago
23
Less logging, more timestamps, please
#162
jar398
closed
9 years ago
5
question about edges to licas during TAG creation.
#161
mtholder
closed
9 years ago
5
where should taxa contributed by a lower ranked tree go when there is conflict?
#160
mtholder
closed
8 years ago
4
edges corresponding to compatible phylogenetic statements considered conflict
#159
mtholder
closed
8 years ago
18
edges corresponding to trivial phylogenetic statements considered conflict
#158
mtholder
closed
8 years ago
9
synthesis issue: only using mrca taxa from an edge ("relationship" in neo4j lingo) rather than node
#157
mtholder
closed
8 years ago
24
111 groupings in synthetic tree that are not supported by any input source tree
#156
mtholder
closed
8 years ago
15
edge properties: distinguish between "supported by" and "traversed by" when referring to studies for an edge
#155
mtholder
closed
8 years ago
0
incorrect association of a node in the synthetic tree: wrong taxonomic node
#154
mtholder
closed
8 years ago
14
prune empty higher taxa that are only coming from OTT, perhaps?
#153
mtholder
closed
9 years ago
5
Ensure web services work before committing to master
#152
jar398
closed
9 years ago
21
non-taxonomic node with out-degree=1
#151
mtholder
closed
8 years ago
3
Modify subtree and induced_subtree methods to include supporting info
#150
kcranston
closed
9 years ago
1
clarify the meaning of num_synth_children in the return value of graph_of_life/node_info
#149
mtholder
closed
8 years ago
2
clarify mrca web service docs on the issue of MRTA
#148
mtholder
closed
8 years ago
1
Need documentation of how we munge names in newick export
#147
mtholder
opened
9 years ago
13
mvn_serverplugins.sh should be executable
#146
jar398
closed
9 years ago
5
Pluginsv2
#145
josephwb
closed
10 years ago
0
tree_of_life/mrca fails if given a single node
#144
josephwb
closed
10 years ago
2
Tree ids don't work with phylesystem API methods
#143
jar398
closed
8 years ago
3
For graph/source_tree, can the commit sha be made optional?
#142
jar398
closed
9 years ago
2
Fencepost error in induced_subtree
#141
jar398
closed
10 years ago
1
Failing tests on devapi: IndexOutOfBoundsException and two others
#140
jar398
closed
8 years ago
1
Deal with dependencies of test scripts
#139
jar398
closed
8 years ago
1
trouble with draftTreeRootNodeId
#138
jar398
closed
10 years ago
4
Travis-CI integration and basic functionality tests
#137
chinchliff
closed
10 years ago
0
node_ids service
#136
josephwb
closed
10 years ago
1
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