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PASSIONLab / BELLA

BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
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build error bella-gpu #32

Closed PYB-SU closed 2 years ago

PYB-SU commented 2 years ago

Hi, when building bella-gpu (make bella-gpu) ; I've got an error

nvcc -arch=sm_70 -O3 -maxrregcount=32 -std=c++14 -Xcompiler -fopenmp -w -Iinclude/common/GTgraph/sprng2.0-lite/include -IloganGPU -Iseqan -o bella hash_funcs.o Kmer.o Buffer.o fq_reader.o optlist.o src/main.cu -L/home/boelle/Documents/bella/libbloom/build -lbloom -lpthread -lbz2 -lz -DNVCC

seqan/seqan/score/score_matrix_dyn.h:110:489: error: template argument 1 is invalid 110 | enum class AminoAcidScoreMatrixID : std::underlying_type_t<decltype(Find<impl::score::MatrixTags, ScoreSpecBlosum30>::VALUE)>

Seems like some template library must be missing - Do you have an idea ?
building without GPU is ok (make bella ); building LOGAN runs fine

platform : Ubuntu 20.04 gcc : 9.4.0 nvcc : 11.6 (quadro P1000 - architecture=sm_62)

Thanks a lot.

PYB-SU commented 2 years ago

I got it to compile with nvcc 10.2 + gcc 8

giuliaguidi commented 2 years ago

Great, I'll look into this! I found the current LOGAN implementation could break for large-ish input. A fix is underway!

Best, Giulia