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PEtab-dev
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PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
https://petab.readthedocs.io
MIT License
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False positive invalid condition ID.
#477
FFroehlich
opened
3 years ago
6
Separate repositories for PEtab format specification and library
#476
dweindl
closed
3 years ago
3
Release 0.1.11
#475
dweindl
closed
3 years ago
2
Priors for functions of parameters
#474
dweindl
opened
3 years ago
0
Feature synthetic data
#472
dilpath
closed
3 years ago
3
Update documentation ref/example
#470
dweindl
closed
4 years ago
2
Release 0.1.9
#468
dweindl
closed
4 years ago
2
Error message for missing IDs, with line numbers.
#467
dilpath
closed
4 years ago
2
Delimiter issues in empty lines: tab-only line produces regex error with petablint
#466
PaulJonasJost
closed
4 years ago
1
fix #462
#463
FFroehlich
closed
4 years ago
9
Fix recursive docs build; Add pdf-doc script
#461
yannikschaelte
closed
4 years ago
1
Minor fixes and test sonarcloud
#460
dweindl
closed
4 years ago
2
Allow URL as filenames for YAML files and SBML models (Closes #187)
#459
dweindl
closed
4 years ago
1
Fix rst doc format
#458
yannikschaelte
closed
4 years ago
1
saving visualization spec
#457
plakrisenko
closed
4 years ago
1
PEtab's petablint validator doesn't seem to actually recognize .sbml files?
#456
VitaminBrad
closed
4 years ago
3
Add issue template for PEtab specification change requests
#455
dweindl
closed
4 years ago
1
Release 0.1.8
#454
yannikschaelte
closed
4 years ago
1
update changelog, version, fix readme
#453
yannikschaelte
closed
4 years ago
1
Write format specification in rst + add noise model description
#452
yannikschaelte
closed
4 years ago
1
Fix calculate_llh and calculate_llh
#451
dweindl
closed
4 years ago
1
`petab.calculate_llh` and `petab.calculate_chi2` with observableParameters
#450
paulflang
closed
4 years ago
7
Fix documentation for prior distribution (Closes #448)
#449
dweindl
closed
4 years ago
1
objectivePriorType vs. priorType
#448
paulflang
closed
4 years ago
1
Lint: detect duplicated observable IDs
#446
lcontento
closed
4 years ago
1
Allow model time in observable formulas
#445
lcontento
closed
4 years ago
1
Make float parsing from CSV round-trip
#444
lcontento
closed
4 years ago
3
Make float parsing from CSV round-trip
#443
lcontento
closed
4 years ago
3
fix broken parameter table Fujita
#440
jvanhoefer
closed
4 years ago
0
Prior definition still in feature branch
#439
jvanhoefer
closed
3 years ago
2
update libcombine version to 0.2.6 after fix
#437
yannikschaelte
closed
4 years ago
1
Add support for non-SBML models
#436
dweindl
opened
4 years ago
6
Update tests
#435
yannikschaelte
closed
4 years ago
1
Use core.is_empty instead of np.isnan. Closes #433
#434
LeonardSchmiester
closed
4 years ago
1
Error in merge_preeq_and_sim_pars_condition
#433
LeonardSchmiester
closed
4 years ago
1
Add link to arxiv manuscript to Readme file
#432
dweindl
closed
3 years ago
0
default value for the column x_label in vis_spec
#431
plakrisenko
closed
4 years ago
4
add sorting of indices of dataframes for the correct sorting of x-values
#430
erikadudki
closed
4 years ago
2
Visualization column XValue not mandatory anymore
#429
erikadudki
closed
4 years ago
1
Release 0.1.7
#427
yannikschaelte
closed
4 years ago
1
Update/add format figure
#426
yannikschaelte
closed
4 years ago
1
Add support for ordinal / qualitative data
#425
LeonardSchmiester
opened
4 years ago
0
Update MEIGO coverage and links
#424
yannikschaelte
closed
4 years ago
1
Release 0.1.6
#423
yannikschaelte
closed
4 years ago
1
update changelog
#422
yannikschaelte
closed
4 years ago
0
petab_import 'g++' failed with exit status 1
#421
mhhoog
closed
4 years ago
1
Specifying simulation starting time other than 0.0
#420
dweindl
opened
4 years ago
4
visualization incomplete vis_spec
#419
plakrisenko
closed
4 years ago
3
more tests for visualization routine
#418
MerktSimon
closed
4 years ago
3
tests minimal visualization table
#415
MerktSimon
closed
4 years ago
0
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