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PEtab-dev
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PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
https://petab.readthedocs.io
MIT License
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Rename observables table observable table.
#533
FFroehlich
closed
2 years ago
1
Petab Yaml: Include petabId / modelId
#532
dlill
closed
2 years ago
3
Proposed new column in measurementData.tsv: datapointId
#531
dlill
closed
2 years ago
4
Fix documentation build on RTD
#530
dweindl
closed
2 years ago
1
Fix missing yaml file schema
#529
dweindl
closed
2 years ago
1
PEtab Extensions
#528
FFroehlich
opened
2 years ago
0
Proposal for the introduction of extensions
#527
FFroehlich
closed
2 years ago
2
Update PEtab support table for AMICI/pyPESTO/pyABC
#526
dweindl
closed
2 years ago
1
observable table vs observables table
#525
FFroehlich
opened
2 years ago
1
optimization vs estimation
#524
FFroehlich
opened
2 years ago
1
Add Daniel Lill's R package for PEtab
#523
dilpath
closed
3 years ago
1
Specification for formula format
#522
dilpath
opened
3 years ago
1
Fix petab_scope_and_files.svg: 'estimated'->'estimate'
#521
dweindl
closed
3 years ago
1
Update changelog
#519
dweindl
closed
3 years ago
1
Remove python-package-related files
#518
dweindl
closed
3 years ago
2
Cleanup repository after splitting off PEtab library
#517
dweindl
closed
3 years ago
0
plotting only simulation
#516
PaulJonasJost
closed
3 years ago
5
Clarify reinitialization for parameters in the condition table
#513
dweindl
opened
3 years ago
7
Update tutorial.rst
#512
LeonardSchmiester
closed
3 years ago
2
Doc: Add editorial board
#511
dweindl
closed
3 years ago
5
Update how-to-cite (Closes #432)
#509
dweindl
closed
3 years ago
2
Can we take the nominalValue in the parameters table from SBML?
#508
thomassligon
closed
3 years ago
5
Doc: Add description of PEtab development process
#507
dweindl
closed
3 years ago
3
Broadcast and mapping of scale and unscale functions
#505
yannikschaelte
closed
3 years ago
2
Update Python requirement (3.7.1)
#502
dweindl
closed
3 years ago
2
Visualization: add option to scale data
#501
dweindl
opened
3 years ago
0
Specifying units
#500
dweindl
opened
3 years ago
1
Visualization specification: Is tsv the right choice?
#499
dweindl
opened
3 years ago
2
Visualization: allow grouping plots?
#498
dweindl
opened
3 years ago
0
Doc: Update tutorial references
#497
dweindl
closed
3 years ago
2
Release 0.1.14
#496
jvanhoefer
closed
3 years ago
5
Extension to correlated observables
#495
FFroehlich
opened
3 years ago
0
Release 0.1.13
#494
yannikschaelte
closed
3 years ago
2
fix for pandas 1.2.0
#493
dilpath
closed
3 years ago
2
fix ParameterScale sampler fixes #491
#492
jvanhoefer
closed
3 years ago
4
PriorParameters in sampling are not transformed for parameterScaleUniform
#491
jvanhoefer
closed
3 years ago
7
Release 0.1.12
#490
dweindl
closed
3 years ago
2
Update tutorial
#489
dweindl
closed
3 years ago
2
Add tutorial for creating PEtab files
#488
dweindl
closed
3 years ago
2
Validator: output message in case of successful check is added
#487
plakrisenko
closed
3 years ago
3
Doc: Add 'scope' section and illustration of PEtab components
#486
dweindl
closed
3 years ago
2
Fix default argument for optional 'model' parameter in 'petab.lint.ch…
#485
dweindl
closed
3 years ago
2
Doc: Clarify requirements for IDs
#484
dweindl
closed
3 years ago
2
add features supported in SBML2Julia to README
#483
paulflang
closed
3 years ago
1
Update README: Add link to sbml2julia
#482
dweindl
closed
3 years ago
2
Questions regarding setting initial concentrations via condition table
#481
dweindl
opened
3 years ago
7
fix simulate
#479
dilpath
closed
3 years ago
3
petablint does not check if parameter value in SBML matches parameter table
#478
jvanhoefer
closed
3 years ago
1
False positive invalid condition ID.
#477
FFroehlich
opened
3 years ago
6
Separate repositories for PEtab format specification and library
#476
dweindl
closed
3 years ago
3
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