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PLN-team
/
PLNmodels
A collection of Poisson lognormal models for multivariate count data analysis
https://pln-team.github.io/PLNmodels
GNU General Public License v3.0
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error in PLN network model postTreatment
#138
maddyduran
opened
2 days ago
1
Fix in ZIPLN when initialization fails to converge
#137
jchiquet
closed
1 week ago
0
Zipln formula
#136
jchiquet
closed
2 weeks ago
0
More comprehensive error msgs
#135
jchiquet
closed
2 weeks ago
0
124 plnmodels is not compatible with r 41
#134
jchiquet
closed
3 weeks ago
0
Add more documentation, vignettes and example for ZIPLN and ZIPLNnetwork
#133
jchiquet
opened
3 weeks ago
0
fix issue #130 with deprecated use os purrr:map_chr
#132
jchiquet
closed
3 weeks ago
0
Some Fix in plnnetwork (Issue #129 and #130)
#131
jchiquet
closed
3 weeks ago
0
purrr: use an explicit call to `as.character()` within `map_chr()`
#130
jchiquet
closed
3 weeks ago
0
PLNnetwork does not seem not converge nicely
#129
jchiquet
closed
3 weeks ago
1
More accurate message when torch is diverging.
#128
Bastien-mva
closed
3 weeks ago
2
comment the line with delta_x that is not defined.
#127
Bastien-mva
closed
5 months ago
0
Problem with formulas in ZIPLN?
#126
papayoun
closed
1 week ago
4
124 plnmodels is not compatible with r 41
#125
mahendra-mariadassou
closed
6 months ago
0
PLNmodels is not compatible with R < 4.1
#124
fplazaonate
closed
6 months ago
3
set approx to TRUE by default
#123
jchiquet
closed
6 months ago
0
simplication in optim and output objective in optim_par
#122
jchiquet
closed
6 months ago
0
Zipln
#121
jchiquet
closed
7 months ago
0
Authors
#120
mahendra-mariadassou
closed
7 months ago
0
Add AUTHORS file to repo
#119
mahendra-mariadassou
closed
7 months ago
0
Continuing development of ZIPLN models
#118
jchiquet
closed
7 months ago
0
Add microcosm data to PLNmodels
#117
mahendra-mariadassou
opened
8 months ago
1
Integrating ZIPLN to PLNmodels
#116
jchiquet
closed
8 months ago
0
114 inconsistency between fitted and predict
#115
mahendra-mariadassou
closed
8 months ago
1
Inconsistency / clarification required between field `fitted` and function `predict`
#114
jchiquet
closed
8 months ago
0
Issue 112 jackknife
#113
mahendra-mariadassou
closed
10 months ago
0
Jackknife estimate of the variance
#112
scj-robin
closed
10 months ago
13
Use parallel computing via future_lapply only when appropriate (detect multithreaded backend)
#111
jchiquet
opened
10 months ago
0
Changes from Cole Trapnell
#110
brgew
closed
10 months ago
11
108 the documentation of pln param
#109
mahendra-mariadassou
closed
12 months ago
0
The documentation of `PLN_param()` is incomplete
#108
mahendra-mariadassou
closed
12 months ago
0
torch backend crashing where nlopt succeeds?
#107
ctrapnell
closed
12 months ago
2
Add TMM method to compute_offset
#106
julieaubert
closed
1 year ago
0
fix the number of parameters for PLNLDA models
#105
jchiquet
closed
1 year ago
0
Merge dev
#104
jchiquet
closed
1 year ago
0
Error when using PLN regression with univariate Y
#103
julieaubert
closed
1 year ago
1
Looks like there is a typo here (roun<d) - to be fixed later
#102
jchiquet
closed
1 year ago
0
How do I extract the ELBO?
#101
Ananyapam7
closed
3 weeks ago
7
Problems with the VE-Step optimization
#100
khaledbouguila
closed
3 weeks ago
2
initialize variational parameters with current values in vestep when possible
#99
jchiquet
closed
1 year ago
0
matrix is singular or not positive definite
#98
mjeanbille
closed
1 year ago
4
Merging dev
#97
jchiquet
closed
1 year ago
2
dgCMatrix as an input
#96
akhst7
closed
1 year ago
1
Bug in `PLNmixture()` when `clusters` is not a complete sequence
#95
mahendra-mariadassou
closed
1 year ago
5
More questions.
#94
brgew
closed
1 year ago
2
Questions.
#93
brgew
closed
1 year ago
2
PLNnetwork not incorporating matrix penalty_weights when fitting models
#92
dcalderon
closed
1 year ago
5
Big variation of the 'loglik' after one additional VE step
#91
scj-robin
closed
1 year ago
7
Null (or infinite in log-scale) offset
#90
mahendra-mariadassou
opened
2 years ago
0
Singular matrix or not positive definite
#89
GMBog
closed
2 years ago
8
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