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PNNL-CompBio
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decomprolute
A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.
MIT License
15
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4
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updated xcell to work with matrisome
#228
sgosline
closed
11 months ago
0
updated simulation and tests to not use toy data at alll
#227
sgosline
closed
1 year ago
0
updated matrisome
#226
sgosline
closed
1 year ago
0
removed dependency on cptac pacakge at runtime
#225
sgosline
closed
1 year ago
0
last set of fixes
#224
sgosline
closed
1 year ago
0
hopefully the last fix for the cptac data modules
#223
sgosline
closed
1 year ago
0
updated cptac modules to only pull/cache relevant data
#222
sgosline
closed
1 year ago
0
updated data
#221
sgosline
closed
1 year ago
0
updating cell type matching
#220
sgosline
closed
1 year ago
0
maybe this fixes the error?
#219
sgosline
closed
1 year ago
0
renamed actions and broke them down to smaller ones
#218
sgosline
closed
1 year ago
0
updated with more issues from sampling
#217
sgosline
closed
1 year ago
0
fixed mcpcounter docker image
#216
sgosline
closed
1 year ago
0
update docker
#215
sgosline
closed
1 year ago
0
Dev
#214
sgosline
closed
1 year ago
0
removed r files
#213
sgosline
closed
1 year ago
0
getting matrisome into package
#212
sgosline
closed
1 year ago
0
Test docs
#209
sgosline
closed
1 year ago
0
Fixed the NA value issues in #202
#208
LifeWorks
closed
2 years ago
0
get updated with main
#207
LifeWorks
closed
2 years ago
0
fixed yaml error
#206
sgosline
closed
2 years ago
1
Error when running mRNA-Proteomics Comparison
#205
annapamma
closed
2 years ago
0
Error when running mRNA-Proteomics Comparison
#204
annapamma
closed
2 years ago
1
First example failing
#203
annapamma
closed
1 year ago
3
Run the test script
#202
LifeWorks
closed
1 year ago
5
added test script for docker building
#201
sgosline
closed
2 years ago
0
updated
#200
sgosline
closed
2 years ago
0
updated documentation
#199
sgosline
closed
2 years ago
0
Docker images not building correctly
#198
sgosline
closed
2 years ago
1
Updated with test code
#197
sgosline
closed
2 years ago
0
Local data update
#196
sgosline
closed
2 years ago
0
Better analysis and visualization of immune subtype results.
#195
LifeWorks
closed
1 year ago
1
updated title
#194
sgosline
closed
2 years ago
0
Docs update
#193
sgosline
closed
2 years ago
0
updated with new index
#192
sgosline
closed
2 years ago
0
Error in running for local data
#191
LifeWorks
closed
2 years ago
11
Manual data
#190
sgosline
closed
2 years ago
1
Added ability to select best simulation
#189
sgosline
closed
2 years ago
0
Xcell docker image not building on circleci
#188
sgosline
closed
2 years ago
5
Branch including best simulation and also docker fix
#187
sgosline
closed
2 years ago
0
Add in AML specific signatures
#186
sgosline
closed
1 year ago
1
Edits some language and adds anchors
#185
annapamma
closed
2 years ago
9
Ability to run code on local data
#184
sgosline
closed
2 years ago
0
fix broken pipeline
#183
sgosline
closed
2 years ago
0
Build and push Docker images automatically
#182
annapamma
closed
2 years ago
3
Add geting signature matrix
#181
LifeWorks
closed
2 years ago
0
Update data-sim module to include new sampling
#180
sgosline
closed
1 year ago
0
Added immune subtype metric from existing code
#179
sgosline
closed
2 years ago
0
fixed a typo
#178
LifeWorks
closed
2 years ago
0
Dockerize signature matrices
#177
sgosline
closed
2 years ago
2
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