PRIDE-Archive pride-inspector issues

PRIDE-Archive / pride-inspector

PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics

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issues

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search PRIDE function does't seem to work?

#78 binfen opened 1 year ago
0
Fixed the download link

#77 Mailaender closed 2 years ago
0
Login not working

#76 davco6 opened 3 years ago
0
download private datasets doesn't work

#75 ypriverol opened 4 years ago
1
Search doesn't seem to work?

#74 peterblattmann opened 5 years ago
1
Raw files as download in PRIDE Inspector

#73 marodon opened 5 years ago
0
Incorrect modification residues

#72 liv-acollins opened 6 years ago
0
Exception when opening file with sequences

#71 VeroDup opened 6 years ago
0
Fragmentation table NH3 ions displayed as H20

#70 VeroDup opened 6 years ago
0
Unable to build PRIDE Inspector - missing profiles?

#69 Tobias-Ternent closed 6 years ago
3
Pride inspector is not searching internet database, probably not connecting

#68 rafaeltiveron closed 6 years ago
3
Download not working

#67 gaiazaff closed 7 years ago
2
Added the possibility to start PeptideShaker in Reshake mode.

#66 mvaudel closed 7 years ago
0
release in windows is not working

#65 ypriverol closed 6 years ago
1
Peptide Spectrum Saving and Graph Annotation

#64 DarioS closed 6 years ago
0
Scroll problem in java 7

#63 ypriverol closed 8 years ago
0
PRIDE Inspector Bug with mzTab and Spectrum Files

#62 ypriverol closed 6 years ago
0
updated ms-core-data-api with newer version

#61 epoyraz closed 8 years ago
0
Missing method : getNumberOfMissingSpectra() in ScanExperimentTask.java

#60 epoyraz closed 8 years ago
2
change dependency of mzgraph browser

#59 epoyraz closed 8 years ago
0
UPDATE pom.xml : replaced missing SNAPSHOT with previous stable version

#58 epoyraz closed 8 years ago
0
pom.xml can't find SNAPSHOT dependencies

#57 epoyraz closed 8 years ago
1
How to create an executable jar out of the source ?

#56 epoyraz closed 8 years ago
1
Unsupported major.minor version 51.0

#55 thabangh closed 8 years ago
1
mvn install fails with errors

#54 wolski closed 8 years ago
1
Peak Intensity Distribution Options

#53 DarioS closed 6 years ago
4
Barchart Labels Too High

#52 DarioS opened 8 years ago
2
Unable to open peak files with BOMs set

#51 Tobias-Ternent closed 9 years ago
3
issue with file permission

#50 ypriverol closed 9 years ago
0
partial fix for #48

#49 julianu closed 9 years ago
0
bug with this example in protein group visualization

#48 ypriverol closed 9 years ago
9
gzip spectra associated with the mzIdentML should be unzip

#47 ypriverol closed 9 years ago
1
Decoy report understanding

#46 ypriverol closed 9 years ago
1
Search GUI using web-services fail

#45 ypriverol closed 9 years ago
3
Show progress of protein inference

#44 julianu closed 9 years ago
2
GZ when add files

#43 ypriverol closed 9 years ago
1
When computing the summary charts, the message reads "Loading file..." . It would be nicer if it said "Computing summary charts...".

#42 ypriverol closed 9 years ago
1
Message in Front panel

#41 ypriverol closed 9 years ago
1
In the shipped mzIdentML example file the inspector only showed "Mod: UNIMOD:" as modification (see screenshot).

#40 ypriverol closed 9 years ago
2
It would be great to un by default the protein inference for PRIDE XML

#39 ypriverol opened 9 years ago
0
when protein groups is present the filter do not work

#38 ypriverol closed 9 years ago
1
improve documentation and help

#37 ypriverol closed 9 years ago
1
Develop inference merge

#36 ypriverol closed 9 years ago
0
The protein inference should be optional if the protein inference is not present

#35 ypriverol closed 9 years ago
1
PSM number

#34 ypriverol closed 9 years ago
1
Have an icon for PRIDE Inspector.

#33 ypriverol closed 9 years ago
0
Show Retention time information for PSMs if this is available in the files.

#32 ypriverol closed 9 years ago
1
Using tooltips if no information is present

#31 ypriverol closed 9 years ago
0
Differentiate in a different background colour the information that is “read” from the file, from the one that is generated (for instance pI of proteins).

#30 ypriverol closed 9 years ago
0
Finally it would be very nice to have before the publication the certificate from Apple. I know this does not depend on us only, but it would be very nice indeed.

#29 ypriverol closed 9 years ago
0