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PacificBiosciences
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pb-human-wgs-workflow-wdl
BSD 3-Clause Clear License
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datasetgiab Shared Access Signature (SAS) expired
#81
kuanyili
opened
1 year ago
0
Error response from the container registry, https://pacbio.azurecr.io
#80
byoo
closed
1 year ago
7
Add pb-CpG-tools task
#79
byoo
opened
1 year ago
4
Reorganization from CMH
#78
williamrowell
opened
1 year ago
7
Fix array declaration.
#77
vsmalladi
closed
1 year ago
4
Add dockestore template
#76
vsmalladi
opened
1 year ago
0
Fix yak optional ouputs
#75
vsmalladi
closed
1 year ago
3
Missing quotes
#74
vsmalladi
closed
1 year ago
5
Fix ubam bai generation
#73
vsmalladi
closed
1 year ago
3
Make empty bai file with text
#72
vsmalladi
closed
1 year ago
9
Fix error in validation
#71
vsmalladi
closed
1 year ago
9
Update documentation for reference, resources and test data
#70
vsmalladi
closed
1 year ago
0
Add documentation for how to change URLS
#69
vsmalladi
closed
1 year ago
0
Resolve womtool errors and kmer consistency
#68
vsmalladi
closed
1 year ago
5
hifiasm still uses aligned bam instead of uBAM
#67
vsmalladi
closed
1 year ago
1
create a manifest for resources
#66
williamrowell
closed
1 year ago
0
Use local copies of resources instead of dynamic download
#65
vsmalladi
closed
1 year ago
2
Fix outstanding issues.
#64
vsmalladi
closed
1 year ago
4
yak would run multiples time on parents if there are multiple siblings.
#63
vsmalladi
closed
1 year ago
0
Sample-level pbsv run doesn't compress and index the output VCF
#62
vsmalladi
closed
1 year ago
0
Implement kmer consistency
#61
vsmalladi
closed
1 year ago
0
Fix import issues related to picard.
#60
vsmalladi
closed
1 year ago
22
Some minor fixes and Yak logic
#59
vsmalladi
closed
1 year ago
4
Public urls fails
#58
vsmalladi
closed
1 year ago
0
pbsv_call fails when the provided referece has suffix of .fna instead of .fasta
#57
vsmalladi
closed
1 year ago
0
Fix import and validation bugs.
#56
vsmalladi
closed
1 year ago
5
Update the trio to deal with some additional options
#55
vsmalladi
closed
1 year ago
3
fix region_num bug + make memory input
#54
ducatiMonster916
closed
2 years ago
0
reworked cohort pbsv call task
#53
ducatiMonster916
closed
2 years ago
1
Revert "Update naming of the task."
#52
williamrowell
closed
2 years ago
0
Update naming of the task.
#51
vsmalladi
closed
2 years ago
2
Reduced resources for whatshap_phase
#50
vsmalladi
closed
2 years ago
0
Fix `sample` workflow
#49
TimD1
closed
1 year ago
2
phrank.yaml and yaml2ped.yaml were combined. Updated Conda environment
#48
vsmalladi
closed
2 years ago
0
Update image for glnexus
#47
vsmalladi
closed
2 years ago
0
Expose triobin and trioeval option.
#46
vsmalladi
closed
2 years ago
0
Add in conditional for trioeval and triobin. Default is not run.
#45
vsmalladi
closed
2 years ago
3
Cleanup hifiasm_trio related tasks
#44
williamrowell
closed
2 years ago
0
Add a find statement to make file visible to cromwell.
#43
vsmalladi
closed
2 years ago
0
Change output name from task name.
#42
vsmalladi
closed
2 years ago
0
update assembly output names
#41
williamrowell
closed
2 years ago
0
Update tandem_genotypes.wdl
#40
williamrowell
closed
2 years ago
0
Update tandem_genotypes.wdl
#39
williamrowell
closed
2 years ago
0
Update tandem_genotypes.wdl
#38
williamrowell
closed
2 years ago
0
Fix circular reference.
#37
vsmalladi
closed
2 years ago
0
Add logs to outputs.
#36
vsmalladi
closed
2 years ago
0
Strip extension for last_reference_suf_base
#35
vsmalladi
closed
2 years ago
0
Update tandem_genotypes.wdl
#34
williamrowell
closed
2 years ago
0
Update hifiasm_trio.wdl
#33
williamrowell
closed
2 years ago
0
Fix output reference.
#32
vsmalladi
closed
2 years ago
0
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