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PaddlePaddle
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PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Apache License 2.0
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Support for BF16-O2
#248
JamesLim-sy
closed
1 year ago
1
retrosynthesis module didn't work properly
#247
biotech7
opened
1 year ago
0
update the first version of Helixfold cpu onto helixfold_cpu branch
#246
intelyoungway
opened
1 year ago
1
fix the bug of dap for preprocess
#245
GuoxiaWang
closed
1 year ago
0
为什么在用rdkit生成3D分子数据时使用最低能量的呢?
#244
KTJ10086
opened
1 year ago
0
I have a question regarding GEM-2 model, PCQM4Mv2 dataset
#243
Sangyeup
closed
1 year ago
3
Optimize the implementation of StructureModule.
#242
Xreki
closed
1 year ago
0
Fix tensor
#241
Noisyntrain
closed
1 year ago
1
GEM 数据处理很慢
#240
545487677
closed
11 months ago
2
模型预测的蛋白质其中的每个氨基酸结果都特别大,如1028164807,要转换到对应的字母时发生list index out of range
#239
wcf653422590
closed
1 year ago
10
Helixfold cpu
#238
intelyoungway
closed
1 year ago
2
运行 SD VAE 的reconstruct_zinc.py报错
#237
lonngxiang
opened
1 year ago
0
JT_VAE案例中没有指定输入一个simles去生成的案例,麻烦这个有参考吗
#236
lonngxiang
opened
1 year ago
1
Update README_cn.md
#235
LihangLiu
closed
1 year ago
1
Update README.md
#234
LihangLiu
closed
1 year ago
1
add c128 checkponit with corresponding config, refine reduce_dropout function in distribtued mode
#233
Noisyntrain
opened
1 year ago
1
Can I find code for LIT-PCBA dataset's 3D coordinates generation?
#232
Sangyeup
opened
1 year ago
1
曙光超算上安装Helixfold遇到PaddlePaddle NotFoundError: Operator fused_gate_attention does not have kernel for {data_type[float]; data_layout[Undefined(AnyLayout)]; place[Place(cpu)]; library_type[PLAIN]}.
#231
xiamr
opened
1 year ago
1
paddlepaddle_gpu-0.0.0-cp37-cp37m-linux_x86_64.whl 这个包安装在AMD EPYC 7742平台上发生指令集异常
#230
xiamr
closed
1 year ago
1
Update README.md
#229
LihangLiu
closed
1 year ago
0
Add the processed data and checkpoint download link, refine readme document
#228
Noisyntrain
closed
1 year ago
1
Add the processed data and checkpoint download link
#227
Noisyntrain
closed
1 year ago
1
Add the processed data and checkpoint download link
#226
Noisyntrain
closed
1 year ago
1
How GEM2 use 3d information
#225
tiendatnguyen-vision
closed
1 year ago
3
PTHL For protein function prediction
#224
kanz76
closed
1 year ago
0
add cancer drugs repurpose code: STR.
#223
jieegao
closed
1 year ago
1
adaptive paddle2.4
#222
GuoxiaWang
closed
1 year ago
0
pip install paddlehelix
#221
sightsIndeep
closed
1 year ago
7
change drug sensitivity dir
#220
jinghu23
opened
1 year ago
1
Get a valueError when I try to run the helixfold-single.
#219
yangjinhaoo
closed
1 year ago
10
`Model` object has no attribute decode in HelixFold
#218
bernym12
closed
1 year ago
2
Question about the Branch Parallelism in Evoformer
#217
zyeric
closed
1 year ago
2
跑HelixFold-Single Inference demo时遇到问题
#216
zytskymaker
closed
1 year ago
6
helixfold-single issue
#215
jlspzw
opened
1 year ago
9
Update README.md
#214
LihangLiu
closed
1 year ago
1
Use newer OpenMM
#213
peastman
closed
1 year ago
2
请问一下GeomGCL的代码中,数据处理相关的代码块在哪里呢,我运行到此处下不去了
#212
wkwangkewkwk
opened
1 year ago
1
pcqm4m-v2中valid和test的3D结构信息如何获取?
#211
Ranceeeee
closed
1 year ago
4
请问GEM中微调的shell文件此处运行错误怎么修改
#210
wkwangkewkwk
opened
1 year ago
1
请问能走pickle不走搜索进行蛋白质结构预测吗
#209
wangchenghaonl
closed
1 year ago
13
Update README.md
#208
LihangLiu
closed
1 year ago
1
gem-2 for pcqm4mv2
#207
LihangLiu
closed
1 year ago
1
"Illegal instruction"
#206
sokrypton
closed
1 year ago
0
运行helixfold_single_inference.py 报错
#205
xiong3134
opened
1 year ago
7
update readme
#204
LihangLiu
closed
1 year ago
1
HexliFold-Single inference
#203
LihangLiu
closed
1 year ago
1
ModuleNotFoundError: No module named 'pahelix.featurizers.gem_featurizer'
#202
WeixuanXiong
closed
1 year ago
1
update dcu train
#201
linxd5
closed
1 year ago
0
update dcu train
#200
linxd5
closed
1 year ago
1
Update Helixfold.
#199
SuperXiang
closed
1 year ago
0
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