Consultation on the Scope of HapNe Application, Is It Applicable for Data Analysis of Non-human Primates?

PalamaraLab / HapNe

Haplotype-based inference of recent effective population size in modern and ancient DNA samples

GNU General Public License v3.0

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Consultation on the Scope of HapNe Application, Is It Applicable for Data Analysis of Non-human Primates? #6

Open xiaolingLIANG opened 2 months ago

xiaolingLIANG commented 2 months ago

We have obtained ancient Sichuan snub-nosed monkey data and would like to analyze it using HapNe. May I ask if this software is suitable, and what issues need to be considered during the usage process? Thank you!

rmnfournier commented 1 month ago

The current pipeline has been developed with humans in mind, adapting it essentially boils down to changing the regions.txt files (src/hapne/regions_x.txt) We are working on a new, improved version that will allow the analysis of any organism with a known genetic map.