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PathwayCommons / chibe

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
Eclipse Public License 1.0
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Handling big query results #52

Closed GoogleCodeExporter closed 9 years ago

GoogleCodeExporter commented 9 years ago 
When the query result is very big, the layout is taking too much time. User 
should see the size of the result (and maybe other stats) and should have an 
option to not to create a default big picture view of the query result. These 
are the options that we should provide after a big query result with a no 
pathway in it comes:

* Create a pathway including all reactions and display it (current behaviour).
* Do the same but do not create any compartments in the view.
* Do not create any view, but merge the result with the background model.
* Discard the query result.

Original issue reported on code.google.com by ozgunba...@gmail.com on 1 Mar 2013 at 6:49

GoogleCodeExporter commented 9 years ago 
With the implementation of compartment hiding, we switched from first option to 
the second option. Hiding compartments both decreases layout time, and produces 
more readable graphs.

Original comment by ozgunba...@gmail.com on 25 Jun 2013 at 3:32