Load RPPA - Phosphosite changes are incorrectly interpreted as also total protein

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What steps will reproduce the problem?
1. I load a RPPA formated file with only phosphosite measurements
2. Chibe interprets these as also referring to total protein
3. Chibe color codes total protein and I can't alter it

What is the expected output? What do you see instead?
I expect to see only colors in the phospho circles, instead I've got colored 
rectangles

What version of the product are you using? On what operating system?
latest chibe version Jan 2015 on mac

Please provide any additional information below.
I think the best way to handle this issue is that when we have a total protein 
measurement then the phosphosite column is left blank and chibe interprets this 
as total protein.  otherwise a phospho measurement should only apply to the 
phospho site and not total protein.  Thanks

Original issue reported on code.google.com by ro...@cbio.mskcc.org on 16 Jan 2015 at 5:32

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Alex, can you please also add the sample rppa data file? ChiBE should behave as 
you described.

Original comment by ozgunba...@gmail.com on 5 May 2015 at 3:12