PathwayCommons / chibe

Pathway visualization and analysis tool for Pathway Commons and other BioPAX data
Eclipse Public License 1.0
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Cannot load SIF file generated using ChiBE #64

Closed GoogleCodeExporter closed 5 years ago

GoogleCodeExporter commented 9 years ago
I had loaded a sample .owl file in ChiBE and converted the model to SIF (using 
rule: REACTS_WITH). The resulting SIF view was saved on my local computer as 
.sif file. However when I try to load the same SIF file later, I get a prompt 
saying "Performing layout" but cannot get any visualization. The screen remains 
blank after opening the file. 

I am using ChiBE 2.2 for Windows (64 bit). I request you to help me solve this 
issue.

Thanks,
Shweta Kolhi, Ph.D.
Post-Doctoral Fellow,
Advanced Centre for Treatment Research &
Education in Cancer
India.

Original issue reported on code.google.com by shwetako...@gmail.com on 6 Feb 2015 at 7:55

GoogleCodeExporter commented 9 years ago
Hi Shweta, can it be because the owl file is too big, hence the SIF graph is 
too big, and it takes forever to layout?

Please try with a smaller BioPAX file and let me know if you still cannot get a 
view.

Original comment by ozgunba...@gmail.com on 5 May 2015 at 3:15