Open GoogleCodeExporter opened 9 years ago
Following is a comment from Huaiyu Mi on ChiBE layout:
... The layout for compartments and complexes is slightly better than some of
the other software we used before, but the overall layout is still not ideal
for signaling pathways. ...
...I think if the following 2 changes can be made, the layout may improve quite
a bit.
1. Avoid edge from crossing the node.
2. Keep input, output and process node in a straight line.
...
Original comment by ozgunba...@gmail.com
on 6 Jun 2012 at 5:42
Layout of TP53 neighborhood is not the worst example. Try neighborhood of
PIK3CA with default query parameters.
Original comment by ozgunba...@gmail.com
on 23 Jul 2012 at 3:02
An example of high node overlaps in layout happens in L3 sample graph "PI3K
Events in ERBB2 Signaling.owl". Open the outermost pathway. Layout in nucleus
(innermost compartment) is good, but nodes are too close in cytoplasm, and
overlapping in cytoplasmic membrane.
Original comment by ozgunba...@gmail.com
on 25 Sep 2012 at 8:35
Original issue reported on code.google.com by
ugurdogr...@gmail.com
on 30 May 2012 at 12:59Attachments: