PathwayCommons factoid-converters issues

PathwayCommons / factoid-converters

Web services for Factoid project to convert between JSON, BioPAX, SBGN data formats

http://biopax.baderlab.org/factoid-converters/

MIT License

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issues

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Identifying complexes: Xrefs

#34 jvwong opened 1 year ago
0
Support type 'namedComplex'

#33 jvwong closed 1 year ago
1
Failing tests (x-to-SBGN) for certain Java versions

#32 jvwong closed 1 year ago
6
Documents with only Complex entity are effectively ignored

#31 jvwong closed 1 year ago
1
Duplicate participant

#30 jvwong opened 2 years ago
1
Finer control over what goes into BioPAX bp:Pathway 'comments'

#29 jvwong opened 2 years ago
4
Differences in a participant's state/feature leads to disconnected pathway in biopax/sbgn

#28 jvwong closed 1 year ago
7
Biofactoid data in PC 'beta' instance not mapped to non-BioPAX formats

#27 jvwong opened 2 years ago
7
v0.4.0

#26 jvwong closed 3 years ago
0
Skip just interaction itself when it has invalid entity

#25 metincansiper closed 3 years ago
2
Workflow: Redeploy Docker image to development & production instances

#24 jvwong closed 3 years ago
1
Added org field to xref of entities in the biopax to factoid results.

#23 metincansiper closed 3 years ago
2
Bumping the version.

#22 jvwong closed 3 years ago
0
Added pathway id parameter for factoid to biopax conversion

#21 metincansiper closed 3 years ago
0
BioPAX: Reference to biofactoid pathway id

#20 jvwong closed 3 years ago
13
BioPAX: Pathway reference to Biofactoid document/id

#19 jvwong closed 3 years ago
0
Biopax to factoid

#18 metincansiper closed 3 years ago
0
Handling interactions with complexes and their component(s)

#17 jvwong closed 3 years ago
1
Bump patch

#16 jvwong closed 3 years ago
0
BioPAX export to zip broken

#15 metincansiper closed 3 years ago
1
biopax_to_factoid: /biopax-url-to-json format, grounding in response

#14 jvwong opened 3 years ago
2
V0.2.1

#13 jvwong closed 4 years ago
0
Server Error HTTP 500 when trying to retrieve BioPAX or SBGN

#12 jvwong closed 4 years ago
1
Additional attributes

#11 metincansiper closed 4 years ago
0
Additional attributes

#10 metincansiper closed 4 years ago
0
Tag + release

#9 jvwong closed 4 years ago
2
Refs #7:

#8 IgorRodchenkov closed 4 years ago
0
Docker build broken

#7 jvwong closed 4 years ago
9
Added more tests for testing different template types

#6 metincansiper closed 5 years ago
1
Updated the factoid to biopax converter according to the updated factoid model

#5 metincansiper closed 5 years ago
5
In test2.js for Other Interaction type having both participants and controller/target fields is causing redundancy

#4 metincansiper closed 5 years ago
7
Update the json-to-biopax converter

#3 IgorRodchenkov closed 5 years ago
1
Design and use a new input JSON format (to be generated by Factoid)

#2 IgorRodchenkov closed 5 years ago
14
json-to-biopax: 'active'/'inactive' state of controlled participants from Factoid "Protein Modification"

#1 jvwong closed 5 years ago
8