PatrickWeller PanelPal issues

PatrickWeller / PanelPal

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Issue66 - Improved Error Handling and Unit Tests for check_panel.py

#72 ASendellPrice opened 1 day ago
0
Issue59 - Centralise and Standardise Logging

#71 PatrickWeller opened 2 days ago
1
USER STORY: As a clinical scientist / bioinformatician I want to know which panels include a given gene

#70 ASendellPrice opened 2 days ago
0
Issue68 - Improve the quality of the Panel App API Functions script

#69 PatrickWeller opened 6 days ago
2
Ensure panel_app_api_functions is up to scratch

#68 PatrickWeller opened 1 week ago
0
Node.js

#67 Adityavilen closed 2 days ago
0
check_panel.py : improve logging and add unit testing

#66 ASendellPrice opened 2 weeks ago
1
Issue62 Pull Request Template

#65 PatrickWeller closed 1 week ago
1
Sprint 3 - generate_bed.py improvements

#64 madysonic opened 2 weeks ago
0
Edit rate-limiting function

#63 RVel37 opened 2 weeks ago
1
Create a Pull Request Template.md

#62 PatrickWeller opened 2 weeks ago
1
Build python package

#61 ASendellPrice opened 2 weeks ago
0
Issue59 - Change logging configuration so that the main scripts run logging, not each individual function.

#60 madysonic closed 2 weeks ago
1
Change logging configuration so that the main scripts run logging, not each individual function.

#59 madysonic opened 2 weeks ago
0
USER STORY: I want to compare two bed files and find the genomic regions that differ between them.

#58 PatrickWeller opened 2 weeks ago
0
Create CompareGeneLists.py

#57 PatrickWeller opened 2 weeks ago
0
USER STORY: I want to see if there are any gene differences between 2 versions of a panel

#56 PatrickWeller opened 2 weeks ago
0
check_panel.py ready for integration testing

#55 ASendellPrice closed 2 weeks ago
1
Create check_panel.py

#54 ASendellPrice closed 2 days ago
0
Issue48 - Integrate functions so that a bed file is generated from a single input

#53 madysonic closed 2 weeks ago
1
Create function to compare the lists of HGNC names for different panels/versions of panels

#52 RVel37 opened 2 weeks ago
0
Issue40 - tests added for variant_validator_api_functions

#51 madysonic closed 2 weeks ago
1
Create add_analysis_record.py

#50 PatrickWeller opened 2 weeks ago
0
USER STORY: I want to add a patient record to the database

#49 PatrickWeller opened 2 weeks ago
0
Integrate panel app get_genes functions with generate_bed_file function

#48 madysonic closed 1 week ago
0
Integration of bedtools_merge() into variant_validator_api_functions.py

#47 ASendellPrice closed 2 weeks ago
1
Issue42

#46 PatrickWeller closed 2 weeks ago
1
Issue36

#45 RVel37 closed 2 weeks ago
1
Pull HGNC symbols for genes

#44 RVel37 closed 2 weeks ago
1
Integration testing of bedtools_merge()

#43 ASendellPrice closed 1 week ago
0
Add QC to panel app api functions.

#42 PatrickWeller opened 2 weeks ago
1
Add bedtools_merge to development for integration testing

#41 ASendellPrice closed 2 weeks ago
1
Write tests for variant_validator_api_functions.py

#40 madysonic opened 2 weeks ago
1
Issue28 Reverted previous revert.

#39 PatrickWeller closed 2 weeks ago
1
Database - issue #35

#38 RVel37 closed 2 weeks ago
5
Removed pandas from README #27

#37 PatrickWeller closed 2 weeks ago
0
Add error handling and logging to variant_validator_api_functions.py

#36 madysonic closed 1 week ago
2
Create database

#35 RVel37 opened 2 weeks ago
2
Revert "Documentation and separate API requests"

#34 ASendellPrice closed 2 weeks ago
0
Issue20 Change Bed file generation to use Variant Validator Exon coordinates

#33 madysonic closed 2 weeks ago
2
Added a logger, not logging statements yet though #31

#32 PatrickWeller closed 2 weeks ago
2
Need a Logger

#31 PatrickWeller closed 2 days ago
0
Documentation and separate API requests

#30 PatrickWeller closed 2 weeks ago
0
Fill in the README

#29 PatrickWeller opened 2 weeks ago
2
Separate API request function from other functions

#28 PatrickWeller closed 1 week ago
1
Add documentation to panel-app-api-functions.py

#27 PatrickWeller closed 1 week ago
1
#9 Added Environment.yaml

#26 PatrickWeller closed 2 weeks ago
0
Added new file for second sprint #14

#25 PatrickWeller closed 2 weeks ago
0
Function to compare 2 bed files

#24 PatrickWeller opened 2 weeks ago
1
Put a friendlier gene name in the bed file

#23 PatrickWeller closed 2 weeks ago
2