Use raw or transformed counts

PaulingLiu / ROGUE

Assessing the purity of single cell population

BSD 3-Clause "New" or "Revised" License

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Use raw or transformed counts #13

Open kloot opened 6 months ago

kloot commented 6 months ago

Hi, could you please clarify whether one should use raw (and perhaps filtered) counts, or transformed (eg. SCTransformed or normalized) counts when estimating Rogue values? Thanks in advance!