PeeperLab CopywriteR issues

PeeperLab / CopywriteR

DNA copy number detection from off-target sequence data

GNU General Public License v3.0

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issues

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Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution halted

#35 FerTalavera opened 4 months ago
3
Is CopywriteR still being maintained?

#34 RamRS opened 9 months ago
0
failure: length > 1 in coercion to logical (_R_CHECK_LENGTH_1_LOGIC2_=true)

#33 HenrikBengtsson opened 3 years ago
0
matching bam index with file name pattern like "a.bam" and "a.bai"

#32 MajoroMask opened 3 years ago
0
Workers don't locate BAM files in parallel mode

#31 franciscodavid opened 4 years ago
1
CopywriteR halts due to failure to calculate loesses, but only on one server

#30 lm687 closed 4 years ago
2
How to reduce the noise/MAD value?

#29 breezyzhao closed 3 years ago
7
CopywriteR cannot calculate loesses, regardless of bin size

#28 exeter-matthew-wakeling opened 5 years ago
8
Issue #13 persists in CopywriteR 2.14.1 (Bioconductor)

#27 jdm204 opened 5 years ago
1
Inaccurate read count prediction in peak regions

#26 lindashirley99 opened 5 years ago
4
Question: Does CopywriteR consider reads marked as duplicate?

#25 messersc closed 6 years ago
1
Very negative log2 values in some samples for many regions

#24 nstickle closed 6 years ago
1
The following samples refer to .bam files that have not been processed by CopywriteR

#23 crazyhottommy closed 6 years ago
1
issue about the bin size

#22 yx080 closed 6 years ago
4
CopywriteR error

#21 Zhanglesolanin closed 6 years ago
2
no input.Rdata file when using each sample as their own control

#20 nstickle closed 6 years ago
4
BiocParallel errors

#19 yx080 closed 6 years ago
10
destination.error

#18 huanyu0420 closed 6 years ago
7
CopywriteR crashes when "calculating extension cutoff for every peak"

#17 messersc opened 6 years ago
4
CopyWriteR Error

#16 1988liszt closed 6 years ago
1
Connection Errors when analyzing 13GB bams

#15 code837 closed 6 years ago
1
Is it a problem?

#14 ChongJenniferZhang closed 7 years ago
1
Error in CopywriteR function:

#13 matheuscburger closed 7 years ago
3
Request: Custom destination directories

#12 jfiksel opened 7 years ago
1
Request: reuse processed BAM files between runs

#11 afrendeiro closed 7 years ago
3
Paired-end not correctly identified

#10 Caninus23 closed 7 years ago
7
Warning messages for simpleLoess

#9 essere closed 8 years ago
8
Question regarding targeted regions

#8 duartemolha closed 8 years ago
1
Optional parameter to not perform GC/Mappability correction

#7 martijn-cordes closed 8 years ago
1
plotCNA after analysis tells me to re-analyse

#6 mpschr closed 8 years ago
10
SSH error upon run

#5 jdeligt closed 9 years ago
6
Lost compatibility with R3.1

#4 mpschr closed 9 years ago
2
chr sort issue in genome plot with prefix

#3 stefvanlieshout closed 9 years ago
1
Detect sort mode for B/SAM files with GO tags

#2 david-a-parry closed 9 years ago
1
Optimized markdown README

#1 bheesink closed 9 years ago
0