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PennLINC
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babs
BIDS App Bootstrap (BABS)
https://pennlinc-babs.readthedocs.io
MIT License
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[FIX] metadata in `setup.cfg` and `LICENSE`
#77
zhao-cy
closed
1 year ago
0
[FIX] cannot find yaml file error when installed by `pip install .`
#76
zhao-cy
closed
1 year ago
1
[ENH] implement `babs-unzip`
#75
zhao-cy
opened
1 year ago
1
[FIX] `datalad run` error: needs to quote any globs in inputs
#74
zhao-cy
closed
1 year ago
1
[ENH] check if current YAML file makes sense
#73
zhao-cy
closed
1 year ago
0
[ENH] prepare example YAML files
#72
zhao-cy
closed
1 year ago
2
[debug] `datalad run` error when input dataset is an Open Neuro dataset
#71
zhao-cy
closed
1 year ago
1
[discussion] implement `babs-unzip`, or keep all results not zipped at all?
#70
zhao-cy
closed
1 year ago
1
[ENH] implement `babs-unzip`
#69
zhao-cy
closed
1 year ago
1
[ENH] remove `datalad get -r containers` from `participant_job.sh`
#68
zhao-cy
closed
1 year ago
0
[ENH] remove `datalad get –r containers` from `participant_job.sh`
#67
zhao-cy
closed
1 year ago
0
[FIX] make sure `babs-init` runs without `babs_singularity_run` section
#66
zhao-cy
closed
1 year ago
1
[FIX] `babs-init`: compatible when `babs_singularity_run` section is not provided
#65
zhao-cy
closed
1 year ago
1
[FIX] babs-init runs without `babs_singularity_run` section
#64
zhao-cy
closed
1 year ago
0
[ENH] improve section names in container's configuration YAML file
#63
zhao-cy
closed
1 year ago
3
[ENH] implement `babs-merge`
#62
zhao-cy
closed
1 year ago
0
[ENH] where to run the jobs
#61
zhao-cy
closed
1 year ago
3
[ENH] implement `babs-merge`
#60
zhao-cy
closed
1 year ago
1
[ENH] implement `babs-update-setup`
#59
zhao-cy
opened
1 year ago
0
[docs] add more explanations in how to prepare for `babs-init`
#58
zhao-cy
closed
1 year ago
2
[docs] add more explanations in how to prepare for `babs-init`
#57
zhao-cy
closed
1 year ago
0
[FIX] seems templateflow env variable was not used but still success?
#56
zhao-cy
closed
1 year ago
3
[ENH] not to copy FreeSurfer license into BABS project when `babs-init`
#55
zhao-cy
closed
1 year ago
2
[slurm] make `babs-update-setup` compatible to slurm
#54
zhao-cy
opened
1 year ago
0
[ENH] implement `babs-update-setup`
#53
zhao-cy
opened
1 year ago
2
[tests] make sure pytest also work on cluster system
#52
zhao-cy
closed
1 year ago
1
[tests] compatibility when running pytest on cluster system
#51
zhao-cy
closed
1 year ago
0
[ENH] update required `datalad` version to at least `0.18+`
#50
zhao-cy
opened
1 year ago
0
[ENH] edge case in `babs-merge`: duplicated branch for a subject (session)
#49
zhao-cy
opened
1 year ago
1
[FIX] create and fill `.gitignore` early in `babs-init`
#48
zhao-cy
closed
1 year ago
0
[tests] Add pytest for `babs-check-setup`
#47
zhao-cy
closed
1 year ago
0
[tests] add pytest for `babs-check-setup`
#46
zhao-cy
closed
1 year ago
1
[tests] add CircleCI tests of linting
#45
zhao-cy
opened
1 year ago
0
[FIX] BABS installed by `pip install .` does not perform as expected
#44
zhao-cy
closed
1 year ago
3
Finish pytest for `babs-init`
#43
zhao-cy
closed
1 year ago
1
container `sanity_check()` error when `babs-init`
#42
zhao-cy
closed
1 year ago
1
failing test_babs_init
#41
djarecka
closed
1 year ago
3
[tests] finish pytest for `babs-init`
#40
zhao-cy
closed
1 year ago
0
[ENH] add BABS to pypi
#39
zhao-cy
closed
1 year ago
2
[FIX] `babs-init` and `babs-check-setup` won't check further if input dataset is directly from OSF
#38
zhao-cy
closed
1 year ago
1
[FIX] `babs-merge`: bugs when n>5k
#37
zhao-cy
closed
1 year ago
2
[DOCS] docs for CLI: add detailed descriptions and examples
#36
zhao-cy
closed
1 year ago
2
[slurm] set up CircleCI tests for application on slurm clusters
#35
zhao-cy
opened
1 year ago
4
[slurm] make `babs-unzip` compatible to slurm
#34
zhao-cy
opened
1 year ago
0
[slurm] make `babs-merge` compatible to slurm
#33
zhao-cy
closed
1 year ago
1
[slurm] make `babs-check-setup` compatible to slurm
#32
zhao-cy
closed
1 year ago
1
[slurm] make `babs-status` compatible to slurm
#31
zhao-cy
closed
1 year ago
1
[slurm] make `babs-submit` compatible to slurm
#30
zhao-cy
closed
1 year ago
1
[slurm] make `babs-init` compatible to slurm
#29
zhao-cy
closed
1 year ago
9
[ENH] Determine the strategies for cluster abstraction
#28
zhao-cy
opened
1 year ago
0
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