FD Thresh arg error - Githubissues

juansanchezpena commented 4 days ago

Summary

xcp_d: error: unrecognized arguments: --fd-thresh 0.3 xcp_d: error: ambiguous option: --f could match --file-format, --fd-thresh, --fd_thresh, --fs-license-file

fd_thresh 0.3 WORKED!

Additional details

xcp_d version: 0.9.1
Docker version:24.0.7
Apptainer version: ?

What were you trying to do?

fun xcp-d on fmriprep 24.0.1 output:

What did you expect to happen?

conainer launch

What actually happened?

errors above until I used fd_thresh

Reproducing the bug

a " --mode none --participant-label patensasc0085 --input-type fmriprep --file-format cifti --despike fd_thresh 0.3 -p 36P -m y --motion-filter-type notch --band-stop-min 12 --band-stop-max 18 --output-type interpolated --min-coverage 0"

tsalo commented 4 days ago

Can you share the full command you used that failed, as well as the full command that succeeded?

juansanchezpena commented 4 days ago

Thanks for the prompt reply, I was a bit green in saying it worked. I had an error with the syntax for spike denoise, it seems to be running fine with -f now. Will report if anything changes

From: Taylor Salo @.> Date: Tuesday, October 22, 2024 at 11:26 AM To: PennLINC/xcp_d @.> Cc: Sanchez, Juan (NYSPI) @.>, Author @.> Subject: Re: [PennLINC/xcp_d] xcp_d: error: FD Thresh arg error (Issue #1302)

ATTENTION: This email came from an external source. Do not open attachments or click on links from unknown senders or unexpected emails.