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PeteHaitch / DelayedMatrixStats

A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
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Installation of package ‘DelayedMatrixStats’ had non-zero exit status #86

Closed stephen-siecinski closed 3 years ago

stephen-siecinski commented 3 years ago

Encountering the same issue described in this previously closed thread

As demonstrated below

In the previously linked thread, the workaround using devtools no longer works. I've also tried downloading the package directly and installing from the .tar file but that failed with the same error. If anyone is still encountering this issue and found a workaround I would greatly appreciate! 

BiocManager::install("DelayedMatrixStats")
Bioconductor version 3.13 (BiocManager 1.30.16), R 4.1.0 (2021-05-18)
Installing package(s) 'DelayedMatrixStats'
trying URL 'https://bioconductor.org/packages/3.13/bioc/src/contrib/DelayedMatrixStats_1.14.0.tar.gz'
Content type 'application/x-gzip' length 278010 bytes (271 KB)
==================================================
downloaded 271 KB

* installing *source* package ‘DelayedMatrixStats’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Error : in method for ‘colAlls’ with signature ‘x="DelayedMatrix"’:  arguments (‘useNames’) after ‘...’ in the generic must appear in the method, in the same place at the end of the argument list
Error: unable to load R code in package ‘DelayedMatrixStats’
Execution halted
ERROR: lazy loading failed for package ‘DelayedMatrixStats’
* removing ‘######’

The downloaded source packages are in
        ‘/tmp/RtmpjdMFQQ/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In .inet_warning(msg) :
  installation of package ‘DelayedMatrixStats’ had non-zero exit status
edroaldo commented 3 years ago

I am having the same issue. Any help, please? Thank you!

stephen-siecinski commented 3 years ago

I was able to get it to work using the previous version with devtools as a temporary workaround

devtools::install_github("PeteHaitch/DelayedMatrixStats@RELEASE_3_13")

edroaldo commented 3 years ago

Thanks! That solved my issue!

PeteHaitch commented 3 years ago

Updated versions are now available from Bioconductor using BiocManager::install("DelatedMatrixStats")

tryggest commented 2 years ago

This error seems to be back

PeteHaitch commented 2 years ago

Please start a new issue, including the commands you used to install DelayedMatrixStats, its output, and the output of running BiocManager::valid()