An R package with tools for analysing, managing and visualising co-methylation data. Loosely speaking, co-methylation is the correlation structure of DNA methylation.
Subtract sample specific medians per methylation type and then compute IQR and cut offs across samples per methylation type. Average across reads as well? After all, read 1 and read 2 should have the same average with a sample.
Subtract sample specific medians per methylation type and then compute IQR and cut offs across samples per methylation type. Average across reads as well? After all, read 1 and read 2 should have the same average with a sample.