An R package with tools for analysing, managing and visualising co-methylation data. Loosely speaking, co-methylation is the correlation structure of DNA methylation.
For a given reference genome and m, I want to have a CoMeth object that contains all such m-tuples from all samples that I have. I want to be able to incrementally update this object as I get new samples.
Implementation idea
Write a script (R, Makefile, other?) that initialises the CoMeth object from the current samples. When a new sample is added, run comethylation then add .tsv file to the CoMeth object.
Aim
For a given reference genome and
m, I want to have aCoMethobject that contains all such m-tuples from all samples that I have. I want to be able to incrementally update this object as I get new samples.Implementation idea
Write a script (
R,Makefile, other?) that initialises theCoMethobject from the current samples. When a new sample is added, runcomethylationthen add.tsvfile to theCoMethobject.