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PierreBarrat
/
TreeTools.jl
Tools for handling rooted phylogenetic or genealogic trees with Julia.
https://pierrebarrat.github.io/TreeTools.jl/
MIT License
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add simple_shapes.jl
#50
PierreBarrat
closed
3 months ago
0
Rooting from model
#49
PierreBarrat
closed
6 months ago
0
Fix variable reference error in `write_newick` method
#48
huddlej
closed
7 months ago
2
Implement copy methods for TreeNodeData
#47
PierreBarrat
closed
11 months ago
0
add new convert method, with directly TreeNodeData as first argument
#46
PierreBarrat
closed
11 months ago
0
Add isinternal method
#45
PierreBarrat
closed
11 months ago
0
fixes #43: display error for tree with one leaf
#44
PierreBarrat
closed
1 year ago
0
Display faills when node has a singular child
#43
mushunrek
closed
1 year ago
1
fixes #41 : midpoint rooting fails
#42
PierreBarrat
closed
1 year ago
0
midpoint rooting fails
#41
mmolari
closed
1 year ago
2
TreeKnit is failing with new TreeTools master branch
#40
anna-parker
closed
1 year ago
1
Documentation
#39
PierreBarrat
closed
1 year ago
0
Dev/reorganize prune graft
#38
PierreBarrat
closed
1 year ago
0
`TreeNode(tau = 1)` fails
#37
PierreBarrat
closed
1 year ago
0
add method to write multiple trees to the same Newick file
#36
PierreBarrat
closed
1 year ago
0
add two methods for trees: `distance(::Tree, ::Tree)` and `resolution_index(::Tree)`
#35
anna-parker
closed
1 year ago
2
tree display failing in simple example
#34
PierreBarrat
closed
1 year ago
0
Documentation
#33
PierreBarrat
closed
1 year ago
0
Functions for pangraph
#32
PierreBarrat
closed
1 year ago
0
Reorganize write functions
#31
PierreBarrat
closed
1 year ago
0
Functions for pangraph
#30
PierreBarrat
closed
1 year ago
0
Sort nodes in alphabetical order if same rank in mcc
#29
anna-parker
closed
1 year ago
0
Feat/readin tree w treename
#28
anna-parker
closed
2 years ago
0
add branches_in_spanning_tree
#27
PierreBarrat
closed
2 years ago
1
add possibilty to copy label in copy function, fix bug in delete_null…
#26
anna-parker
closed
2 years ago
1
add label field for Tree objects
#25
PierreBarrat
closed
2 years ago
0
Reading multi-line Newick files
#24
PierreBarrat
closed
2 years ago
0
remove unused functions - better show for TreeNode
#23
PierreBarrat
closed
2 years ago
1
add children/ancestor/branch_length methods for TreeNode
#22
PierreBarrat
closed
2 years ago
0
rename `divtime` to `distance`
#21
PierreBarrat
closed
2 years ago
1
rename `divtime` to `distance`
#20
PierreBarrat
closed
2 years ago
0
Rename `divtime` to `distance`
#19
PierreBarrat
closed
2 years ago
0
Revert "Rename `divtime` to `distance`"
#18
PierreBarrat
closed
2 years ago
0
Rename `divtime` to `distance`
#17
PierreBarrat
closed
2 years ago
0
works better with arrays/dicts
#16
PierreBarrat
closed
2 years ago
1
isleaf/isroot functions for splits
#15
PierreBarrat
closed
2 years ago
0
Better misc data
#14
PierreBarrat
closed
2 years ago
0
copy now deepcopies the node data
#13
PierreBarrat
closed
2 years ago
0
fix print_tree_ascii bug on empty node add print_test function
#12
anna-parker
closed
2 years ago
0
Add randstring to numeric labels w less than 3 digits
#11
PierreBarrat
closed
2 years ago
0
Methods `in` and `getindex` for `Tree`
#10
PierreBarrat
closed
2 years ago
1
add documentation to delete_node!
#9
anna-parker
closed
2 years ago
0
add print_tree_ascii function to TreeTools
#8
anna-parker
closed
2 years ago
3
Change behavior of copy function
#7
PierreBarrat
closed
2 years ago
0
Fix/write node order
#6
PierreBarrat
closed
2 years ago
0
TagBot trigger issue
#5
JuliaTagBot
closed
2 years ago
31
add branch length to root node in newick string
#4
PierreBarrat
closed
2 years ago
0
Add ladderize! function
#3
PierreBarrat
closed
2 years ago
0
add ladderize
#2
PierreBarrat
closed
2 years ago
0
Add branch length to root node when writing Newick string
#1
PierreBarrat
closed
2 years ago
0
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