Open ClairePA opened 6 years ago
Retested. I now get the error
when trying to apply the HELM string
PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test Annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
despite this being generated by the webeditor itself.
Steps to reproduce:
I draw the following molecule
HELM generated is correct
HELM generated looks fine.
PEPTIDE1{A.A.A.C.C.D.L.L.L.V.V.V.C.D.D}$$$$V2.0
I create a group and annotate it.PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
into the HELM box.PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$$$$V2.0
which reflects the canvas view i.e. is a set of 3 disconnected fragments.