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Planteome / planteome-core

Repository (and tracker) for a planteome.owl importer for the whole project
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Rename this repo #2

Closed cmungall closed 9 years ago

cmungall commented 9 years ago

The use of planteome.owl extends beyond just amigo2, and will be used throughout the project

I suggest planteome-root but I appreciate root is not a good CS term when dealing with plants

Another possibility is just planteome-ontology

cooperl09 commented 9 years ago

I think planteome-ontology would be confusing as there is no ontology files there. I think Amigo2 seems fine for now, we can always change it later, if the need arises. What other uses does the planteome.owl have?

cmungall commented 9 years ago

Everything. We'll need to move away from the view of multiple silo ontologies weakly connected with xrefs to a single coherent ontology connected via owl axioms, where what were previously considered standalone ontologies become modules.

In terms of actual practical uses, things like a CI job that checks the suite for coherency. As everyone becomes more comfortable with OWL and Protege this will all make more sense

cooperl09 commented 9 years ago

Renamed "planteome-ontology-browsers" as we need some place to store code and discuss issues with all the various browsers we are dealing with. Will make specific labels for them.