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Porthmeus / MeMoMe

Metabolic Model Merging - a semiautomated way to merge genome scale metabolic models
Apache License 2.0
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Issue with metab annotation #154

Open Unaimend opened 3 months ago

Unaimend commented 3 months ago

At branch https://github.com/Porthmeus/MeMoMe/tree/feature/153

The test tests/utils/bulkPerformance.py - test_stefano_bacs_general annotates 0 metabolites with modelSEED as origin DB

When I manually try to annotate with annotateModelSEED_id (see tests/utils/bulkPerformance.py - test_stefano_bacs_seed_id) we annotate a non-zero amount of metabolites.

To reproduce run: python3 -m tests.utils.bulkPerformance && google-chrome performace_table.htmlin the root dir