Mamba

I strongly advice you to use Mamba instead of Conda.

Link to mamba

Create the codna env.

conda env create --file=requirements.yml or

mamba env create --file=requirements.yml

if you just want to update a the environment use

mamba env update -f requirements.yml

Run Tests

python -m unittest

Run application with test model

python3 main.py --model1 tests/dat/e_coli_core.xml --model2 tests/dat/e_coli_core.xml --output here.csv

Execute bulk performance test

Executing python3 -m tests.test_bulkPerformance && google-chrome performace_table.html. should generate a table called performace_table.html in the current folder.