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QI2lab / napari-spot-detection

Detect diffraction limited spots in 2D and 3D, in standard or skewed microscopy images.
GNU General Public License v3.0
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napari-spot-detection

License PyPI Python Version tests codecov napari hub

Interactive parameters selection and visualization of intermediate results for spot detection.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.

Installation

This package relies on spots3d, that details how to install the QI2lab fork of GPUfit, as well as CUDA dependencies. Once spots3d is installed, you can run:

pip install git+https://github.com/QI2lab/napari-spot-detection.git

Contributing

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

License

Distributed under the terms of the GNU GPL v3.0 license, "napari-spot-detection" is free and open source software

Issues

If you encounter any problems, please file an issue along with a detailed description.