RADar-AZDelta Rabbit-in-a-Blender issues

RADar-AZDelta / Rabbit-in-a-Blender

An ETL pipeline to transform your EMP data to OMOP.

https://radar-azdelta.github.io/Rabbit-in-a-Blender/

GNU General Public License v3.0

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issues

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Error running riab --cleanup

#92 JensCardon opened 1 week ago
0
SQL Server: can't connect to named instance with RiaB

#91 rgoesseye opened 1 week ago
1
remove start and end double quote from the cdmFieldName column

#90 pjlammertyn closed 1 month ago
0
Note-nlp: Reserved word offset geeft problemen

#89 FannyDHondt closed 1 month ago
2
only allow standard concepts in the source_to_concept_map

#88 pjlammertyn closed 1 month ago
0
SQL Server: Performance: Columnstore indices

#87 Ben-Goethuys opened 1 month ago
0
SQL Server: Performance: Indices for work tables

#86 Ben-Goethuys closed 1 month ago
1
Source_to_concept_id, mogen niet in source_to_concept in omop komen

#85 kdenturc closed 1 month ago
1
Observation domain toelaten in condition

#84 kdenturc closed 1 month ago
0
DQD: syntax error running PLAUSIBLE_AFTER_BIRTH check in DQ command

#83 kdenturc closed 1 month ago
1
Fix syntax error in DDL query

#82 Ben-Goethuys closed 1 month ago
0
Syntax error source_id_to_omop_id_map DDL query

#81 Ben-Goethuys closed 1 month ago
1
limit source_value columns to a maximum of 255 charcters

#80 pjlammertyn closed 1 month ago
0
escaped columns that could contain reserved words

#79 pjlammertyn closed 1 month ago
0
replaced work table with jinja template variable

#78 pjlammertyn closed 1 month ago
0
changed varchar(50) to varchar(255)

#77 pjlammertyn closed 1 month ago
0
Note: event_id template joins on 'None_swap' work table

#76 lbertelo01 closed 1 month ago
2
Escape reserved words in templates for BigQuery

#75 lbertelo01 closed 1 month ago
1
Use {{ dataset_work }} in templates to avoid errors when running riab

#74 lbertelo01 closed 1 month ago
0
Extra column in the provider table

#73 cdeltomm00 closed 1 month ago
2
Update documentation --cleanup function

#72 JensCardon closed 1 month ago
1
Deviation from OMOP CDM 5.4

#71 JensCardon closed 1 month ago
0
SQL Server: Truncation error with multiple mappings to same concept

#70 Ben-Goethuys closed 1 month ago
0
Issue #67

#69 pjlammertyn closed 2 months ago
0
solves issue #66

#68 pjlammertyn closed 2 months ago
0
Running the --cleanup on one table, should also cleanup the dependent tables in the ETL flow.

#67 pjlammertyn closed 2 months ago
1
SQL Server: riab --run-etl doesn't push the vocabulary table data directly in the omop zone, but puts it in the work zone until the second stage of the ETL process

#66 pjlammertyn closed 2 months ago
1
Bump requests from 2.31.0 to 2.32.0

#65 dependabot[bot] opened 2 months ago
0
solved issue with update query in SQL Server

#64 pjlammertyn closed 3 months ago
0
SQL Server: incorrect syntax in the SOURCE_TO_CONCEPT_MAP_update_invalid_reason.sql.jinja query

#63 pjlammertyn closed 3 months ago
1
Bump tqdm from 4.66.2 to 4.66.3

#62 dependabot[bot] closed 3 months ago
1
The merge event columns step, should check for upload queries in the CDM folder.

#61 pjlammertyn closed 3 months ago
1
added SQL query to the logging if DQD query fails

#60 pjlammertyn closed 3 months ago
0
Added the RiaB version to the logfile

#59 pjlammertyn closed 3 months ago
0
Add RiaB version to the log file.

#58 pjlammertyn closed 3 months ago
1
DQD: typo in template query for BigQuery

#57 lbertelo01 opened 3 months ago
3
Issue #55: Speed up import of vocabularies on SQL Server

#56 pjlammertyn closed 3 months ago
0
Speed up import of vocabularies on SQL Server

#55 pjlammertyn closed 3 months ago
1
Changed default value of the disable_fk_constraints flag in riab.ini

#54 pjlammertyn closed 3 months ago
0
Change default value of the disable_fk_constraints flag in riab.ini to false

#53 pjlammertyn closed 3 months ago
1
add RiaB version and the git commit hash of the CDM folder, to the CDM metadata table

#52 pjlammertyn closed 3 months ago
0
Add riab version and git commit hash to the METADATA table.

#51 pjlammertyn closed 3 months ago
1
SQL Server: from os import XATTR_SIZE_MAX failes on Windows

#50 pjlammertyn closed 3 months ago
1
Table vocabulary should be the first table in an etl run

#49 lbertelo01 closed 3 months ago
1
Suggestion for small change in table order of ETL

#48 lbertelo01 closed 3 months ago
1
Bump sqlparse from 0.4.4 to 0.5.0

#47 dependabot[bot] closed 3 months ago
1
Bump idna from 3.6 to 3.7

#46 dependabot[bot] closed 3 months ago
1
Add check for duplicate custom concepts

#45 pjlammertyn closed 3 months ago
1
Check that the concept_ids in the Usagi CSV's are present in the CONCEPT table (BigQuery)

#44 pjlammertyn closed 3 months ago
0
Check for non-standard codes in usagi files

#43 sieldep closed 3 months ago
1