RBVI stringApp issues - Githubissues

RBVI / stringApp

Cytoscape interface to STRING and STITCH

BSD 2-Clause "Simplified" License

9 stars 10 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Whole species overwrites style

#50 scootermorris opened 3 days ago
0
Merge the new feature that uses jensenlab for resolving instead of STITCH and Viruses

#49 scaramonche closed 2 months ago
0
Feature custom species

#48 scaramonche closed 3 months ago
0
unable to find valid certification path to requested target

#47 prvst opened 6 months ago
0
Network Error (code: 503)

#46 hector3500 closed 8 months ago
3
Make fetching of images multi-threaded

#45 scaramonche closed 8 months ago
1
Add "flat node design" option to various places in the code

#44 scaramonche closed 8 months ago
0
Results Panel not viewable for some network clustering settings

#43 rbutleriii opened 10 months ago
1
Cross-species query shows up on top of the menu despite not being used last

#42 scaramonche closed 10 months ago
1
Add option to apply filtering of enrichment results to all results tables

#41 scaramonche opened 1 year ago
0
Adapt tissue and compartment filters to multi-species networks

#40 scaramonche opened 1 year ago
0
Change logic behind compartments and tissues filters

#39 scaramonche opened 1 year ago
0
Allow the option not to fetch structure images for large networks

#38 scaramonche closed 7 months ago
2
Fallback URIs

#37 scaramonche opened 1 year ago
1
Non-string nodes get STRING color, but they should not.

#36 scaramonche opened 1 year ago
0
Exception when removing redundant terms from empty categories

#35 scaramonche closed 11 months ago
1
Copy network attributes when stringify-ing

#34 scaramonche opened 2 years ago
0
Support cross-species network searches

#33 scaramonche closed 1 year ago
1
Create a filtered enrichment table for each network

#32 scaramonche closed 1 year ago
1
Move interacting parterners matrix to web

#31 scootermorris closed 2 years ago
1
Move species file to web

#30 scootermorris closed 2 years ago
1
Add new enrichment categories automatically to the enrichment filter dialog

#29 scootermorris opened 2 years ago
1
All URLs should be https -- update configuration json

#28 scootermorris closed 2 years ago
1
Edge names in string networks don't follow Cytoscape standard

#27 scootermorris closed 2 years ago
1
Add host-pathogen pairs to species file

#26 scaramonche closed 2 years ago
2
stringify -- how to deal with unmappable nodes

#25 scaramonche closed 2 years ago
2
protein query -- handling ambiguous terms in command mode

#24 scootermorris closed 2 years ago
1
Support cluster-specific enrichment

#23 scootermorris closed 1 year ago
2
Full species list takes too long to come up

#22 scootermorris closed 2 years ago
1
stringApp 1.7.1 enrichment tables update / export issues

#21 Alxcho closed 2 years ago
5
"string show enrichment" toggle is hard to use

#20 AlexanderPico closed 1 year ago
3
Bump httpclient from 4.5 to 4.5.13

#19 dependabot[bot] closed 3 years ago
0
Changing the chart settings for enrichment results automatically resets STRING style

#18 khanspers closed 2 years ago
2
When querying in cytoscape an error appears regarding an old STRING network.

#17 bio-bean closed 2 years ago
3
Added an exception to handle network issues.

#16 marclegeay closed 4 years ago
0
Loading interactions from string-db not completed

#15 Shubham-Bioinformatician closed 2 years ago
2
Change confidence command

#14 marclegeay closed 5 years ago
0
Confidence scores differ between networks & STRING excludes some edges above confidence threshold

#13 arilindsey closed 5 years ago
1
On import, proteins with multiple possible matches are not sorted to the top of the list

#12 jacp1 closed 2 years ago
1
Layered font icons, including EnrichmentMap.

#11 chrtannus closed 6 years ago
0
Change Fill Color mapping.

#10 LHuang2019 closed 6 years ago
1
Change attribute name for exporting node fill color style json accurately

#9 LHuang2019 closed 6 years ago
1
Fix color brewer selection

#8 RBVI closed 2 years ago
1
Add mouse listener to pubmed network search to clear helper text

#7 RBVI closed 6 years ago
0
In diseases parameters aren't reflected in resolution form

#6 RBVI closed 6 years ago
0
In network search bar, if no query is entered and user clicks search, return

#5 RBVI closed 6 years ago
0
Can't export Enrichment Results table

#4 AlexanderPico closed 6 years ago
2
Saving Enrichment Result

#3 wangshun1121 closed 6 years ago
3
stringApp doesn't deal well with blanks in the input

#2 scootermorris closed 7 years ago
1
Long queries return a null error

#1 AlexanderPico closed 8 years ago
6