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RBVI
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stringApp
Cytoscape interface to STRING and STITCH
BSD 2-Clause "Simplified" License
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Whole species overwrites style
#50
scootermorris
opened
2 months ago
0
Merge the new feature that uses jensenlab for resolving instead of STITCH and Viruses
#49
scaramonche
closed
4 months ago
0
Feature custom species
#48
scaramonche
closed
5 months ago
0
unable to find valid certification path to requested target
#47
prvst
opened
8 months ago
0
Network Error (code: 503)
#46
hector3500
closed
10 months ago
3
Make fetching of images multi-threaded
#45
scaramonche
closed
10 months ago
1
Add "flat node design" option to various places in the code
#44
scaramonche
closed
10 months ago
0
Results Panel not viewable for some network clustering settings
#43
rbutleriii
opened
1 year ago
1
Cross-species query shows up on top of the menu despite not being used last
#42
scaramonche
closed
12 months ago
1
Add option to apply filtering of enrichment results to all results tables
#41
scaramonche
opened
1 year ago
0
Adapt tissue and compartment filters to multi-species networks
#40
scaramonche
opened
1 year ago
0
Change logic behind compartments and tissues filters
#39
scaramonche
opened
1 year ago
0
Allow the option not to fetch structure images for large networks
#38
scaramonche
closed
9 months ago
2
Fallback URIs
#37
scaramonche
opened
2 years ago
1
Non-string nodes get STRING color, but they should not.
#36
scaramonche
opened
2 years ago
0
Exception when removing redundant terms from empty categories
#35
scaramonche
closed
1 year ago
1
Copy network attributes when stringify-ing
#34
scaramonche
opened
2 years ago
0
Support cross-species network searches
#33
scaramonche
closed
1 year ago
1
Create a filtered enrichment table for each network
#32
scaramonche
closed
1 year ago
1
Move interacting parterners matrix to web
#31
scootermorris
closed
2 years ago
1
Move species file to web
#30
scootermorris
closed
2 years ago
1
Add new enrichment categories automatically to the enrichment filter dialog
#29
scootermorris
opened
2 years ago
1
All URLs should be https -- update configuration json
#28
scootermorris
closed
2 years ago
1
Edge names in string networks don't follow Cytoscape standard
#27
scootermorris
closed
2 years ago
1
Add host-pathogen pairs to species file
#26
scaramonche
closed
2 years ago
2
stringify -- how to deal with unmappable nodes
#25
scaramonche
closed
2 years ago
2
protein query -- handling ambiguous terms in command mode
#24
scootermorris
closed
2 years ago
1
Support cluster-specific enrichment
#23
scootermorris
closed
1 year ago
2
Full species list takes too long to come up
#22
scootermorris
closed
2 years ago
1
stringApp 1.7.1 enrichment tables update / export issues
#21
Alxcho
closed
2 years ago
5
"string show enrichment" toggle is hard to use
#20
AlexanderPico
closed
1 year ago
3
Bump httpclient from 4.5 to 4.5.13
#19
dependabot[bot]
closed
3 years ago
0
Changing the chart settings for enrichment results automatically resets STRING style
#18
khanspers
closed
3 years ago
2
When querying in cytoscape an error appears regarding an old STRING network.
#17
bio-bean
closed
2 years ago
3
Added an exception to handle network issues.
#16
marclegeay
closed
4 years ago
0
Loading interactions from string-db not completed
#15
Shubham-Bioinformatician
closed
2 years ago
2
Change confidence command
#14
marclegeay
closed
5 years ago
0
Confidence scores differ between networks & STRING excludes some edges above confidence threshold
#13
arilindsey
closed
5 years ago
1
On import, proteins with multiple possible matches are not sorted to the top of the list
#12
jacp1
closed
3 years ago
1
Layered font icons, including EnrichmentMap.
#11
chrtannus
closed
6 years ago
0
Change Fill Color mapping.
#10
LHuang2019
closed
6 years ago
1
Change attribute name for exporting node fill color style json accurately
#9
LHuang2019
closed
6 years ago
1
Fix color brewer selection
#8
RBVI
closed
2 years ago
1
Add mouse listener to pubmed network search to clear helper text
#7
RBVI
closed
6 years ago
0
In diseases parameters aren't reflected in resolution form
#6
RBVI
closed
6 years ago
0
In network search bar, if no query is entered and user clicks search, return
#5
RBVI
closed
6 years ago
0
Can't export Enrichment Results table
#4
AlexanderPico
closed
6 years ago
2
Saving Enrichment Result
#3
wangshun1121
closed
6 years ago
3
stringApp doesn't deal well with blanks in the input
#2
scootermorris
closed
7 years ago
1
Long queries return a null error
#1
AlexanderPico
closed
8 years ago
6
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