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RGLab
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openCyto
A package that provides data analysis pipeline for flow cytometry.
GNU Affero General Public License v3.0
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quadGate.tmix gating method
#116
anaraserikbek
closed
7 years ago
2
speed up flowClust.2d
#115
mikejiang
closed
7 years ago
7
registerPlugin
#114
anaraserikbek
closed
7 years ago
12
algorithm incorporated in openCyto that would identify several clusters in 2D data
#113
anaraserikbek
closed
8 years ago
7
possibility of importing polygon gates
#112
anaraserikbek
closed
7 years ago
2
Using nonDebris+ & DebrisGate+
#111
anaraserikbek
closed
7 years ago
3
openCyto gating algorithms questions
#110
anaraserikbek
closed
7 years ago
2
importing the gating workspace from flowJo as .xml file in order to work in flowSOM
#109
anaraserikbek
closed
7 years ago
1
Using one flowJo workspace to gate many .FCS files
#108
anaraserikbek
closed
3 years ago
4
write a separate vignette to demonstrate the usages of the different gating methods
#107
mikejiang
closed
8 years ago
2
OpenCyto Analysis of HVTN080 Broken
#106
tobiguennel
closed
3 years ago
0
Example of flowClust
#105
SamGG
closed
7 years ago
6
Can't register native flowDensity function
#104
SamGG
closed
8 years ago
13
getPopStats: any difference between statistic="count" vs statistic="freq"
#103
SamGG
closed
7 years ago
5
3 peaks, another flavor of "between two peaks"
#102
SamGG
closed
8 years ago
6
clustering region between two peak area in flow cytometry data
#101
kdh4win4
closed
7 years ago
17
openCyto / flowStats error
#100
kdh4win4
closed
8 years ago
9
unable to load openCyto
#99
chethanjjj
closed
8 years ago
0
incorporated latest `.improvedMindensity` changes from @gfinak and @ptvan
#98
ptvan
closed
9 years ago
0
mindensity gating problem
#97
chethanjjj
closed
9 years ago
8
consistent argument names for gating functions: `channel` vs. `stain` ?
#96
ptvan
closed
9 years ago
4
improving tailgate performance
#95
ptvan
closed
3 years ago
6
Could not load some .fcs files
#94
XuanTungNCEC
closed
9 years ago
2
inappropriate error handling in flowClust.2d
#93
mikejiang
closed
3 years ago
3
trying to save gating template
#92
rohunk
closed
7 years ago
1
Cannot Run 2D flowClust with current openCyto
#91
laderast
closed
9 years ago
2
updated docs in response to #183
#90
stedy
closed
9 years ago
4
tmixFilter with flowset
#89
jpabbuehl
closed
9 years ago
5
fixed some typos
#88
stedy
closed
9 years ago
0
Example file has a issue with 'register plugins'
#87
rohunak
closed
9 years ago
3
special characters in marker names
#86
mikejiang
closed
7 years ago
9
stop.at argument to gating doesn't recognize partial or full path
#85
gfinak
closed
10 years ago
1
speed up refGate
#84
mikejiang
closed
10 years ago
2
skip 'recompute' by returning events indices along with the gate from the gating function
#83
mikejiang
closed
10 years ago
3
improve the tailgate robustness
#82
mikejiang
closed
10 years ago
0
tailgate (cytokine) bug
#81
mikejiang
closed
10 years ago
0
flowClust prior is erroneous when using kmeans_prior. The w0 parameter is a vector that is inappropriately replicated to length(w0)*K rather than K within prior_flowClust. This causes an error in the model fitting.
#80
gfinak
closed
10 years ago
0
reduce the default number of vertexes of polygonGate generated by flowClust
#79
mikejiang
closed
10 years ago
4
gating on polyFunctions node
#78
mikejiang
closed
3 years ago
0
handle outlier samples without error out
#77
mikejiang
closed
10 years ago
4
write a seperate vignette to explain how the csv expansion works
#76
mikejiang
closed
10 years ago
0
pass the extra arguments to 'fread' in gatingTemplate constructor
#75
mikejiang
closed
10 years ago
0
write unit tests
#74
mikejiang
closed
8 years ago
0
support multi-dimensional gating method
#73
mikejiang
closed
10 years ago
2
support registering custimized preprocessing function
#72
mikejiang
closed
10 years ago
1
prior_flowClust gives a warning about default value of `K` even when it is provided to `flowClust``
#71
gfinak
closed
10 years ago
0
validity check for input data to prevent the uninformative error message
#70
mikejiang
closed
10 years ago
3
gating method naming convention
#69
mikejiang
closed
7 years ago
4
prior broken for K=1 and error in back-transformation for ellipse gates
#68
gfinak
closed
10 years ago
0
convert an existing gating Hierarchy to the csv gating template
#67
mikejiang
closed
3 years ago
11
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