issues
search
RajLabMSSM
/
QTL-mapping-pipeline
A snakemake pipeline for QTL mapping. Based on the GTEX pipeline
3
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
edQTL revisions
#24
ryncuddleston
closed
1 year ago
0
edQTL pieces
#23
ryncuddleston
closed
1 year ago
0
allow for snp filtering for qtls
#22
bzmull
closed
2 years ago
0
having some fun
#21
bzmull
closed
2 years ago
0
lowered mem due to minerva changes
#20
bzmull
closed
2 years ago
0
small edits to test git branching
#19
bzmull
closed
2 years ago
0
Let expression thresholds be set by user
#18
jackhump
opened
3 years ago
0
peer R package
#17
jackhump
opened
3 years ago
0
put back qvalue calculation after permutation step
#16
jackhump
opened
3 years ago
1
Using multiple interaction eQTLs files in parallel
#15
ricardovialle
closed
3 years ago
0
Interaction-eQTLs + trans
#14
ricardovialle
closed
3 years ago
0
Updates from AMP-PD run
#13
ricardovialle
closed
3 years ago
0
sQTLs - test only SNPs within 50kb of cluster boundary
#12
jackhump
closed
4 years ago
2
Conditionally independent (secondary) QTLs
#11
jackhump
opened
4 years ago
1
convert TensorQTL per-chrom Parquet files into giant tabixed files
#10
jackhump
closed
4 years ago
0
group sQTLs by cluster OR gene
#9
jackhump
closed
4 years ago
1
Run with zero PEER factors
#8
jackhump
closed
4 years ago
0
chunking error - testing same genes twice
#7
jackhump
closed
4 years ago
1
Qtltools pvalue nominal threshold
#6
eudine
closed
4 years ago
0
map_junctions_to_genes
#5
jackhump
closed
4 years ago
2
add group ID and strand columns to expression.bed.gz and splicing.bed.gz
#4
jackhump
closed
4 years ago
1
error while loading shared libraries: libgsl.so.0
#3
jackhump
closed
4 years ago
0
add TensorQTL and interaction QTLs
#2
jackhump
closed
4 years ago
3
add splicing QTL functions
#1
jackhump
closed
4 years ago
0