Closed Al-Murphy closed 2 years ago
I've rewritten much of this function in echodata
(used by the echoverse branch) so it better uses MungeSumstats
's colname standardisation function, in a way that also allows users to manually specify colnames without the two standardization strategies interfering with each other.
I believe this is now resolved in echodata
.
import_topSNPs doesn't seem to like if you change the positional column name from BP even if you change the input too:
I think this is down to the munge functionality, where you over ride the
position_col
variable's value (line 73)