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RajLabMSSM / echotabix

echoverse module: Tabix indexing and querying.
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Add tabix CLI interface #1

Closed bschilder closed 2 years ago

bschilder commented 2 years ago

Originally used a wrapper for tabix via the CLI, which was faster but required user installation.

Rhtslib installs tabix for you automatically by compiling the C source code during R package installation.

The sys may also helpful here for creating more robust CLI wrappers.

bschilder commented 2 years ago

Now done via "conda" option, which uses echoconda