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Rfam
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rfam-production
Rfam production pipeline
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Release checklist 15.0
#148
Open
emmaco
opened
1 year ago
emmaco
commented
1 year ago
Data updates
[ ] Export annotated CM and SEED files
[ ] Update PDB mapping
[ ] Run view processes
[ ] Run clan competition
[ ] Update tables in rfam live (prepare rfam live)
Update FTP archive
[ ] Create .release FTP directory
[ ] database_files
[ ] fasta_files
[ ] genome_browser_hub
[ ] rfam2go
[ ] Rfam.clanin
[ ] Rfam.cm.gz
[ ] Rfam.full_region.gz
[ ] Rfam.pdb.gz
[ ] Rfam.seed.gz
[ ] Rfam.3d.seed.gz
[ ] Rfam.seed_tree.gz
[ ] stats file
[ ] COPYING
[ ] README including Section 5
[ ] Rfam.tar.gz
[ ] USERMAN
Pre Announce
[ ] Update EBI text search on wwwdev
[ ] Update the website
[ ] Add release graphic
[ ] Update pages with new data (e.g. microRNA or viral project pages)
[ ] Merge new code into rfam-website master
[ ] Update the REL MySQL database
[ ] Update the PG/FB1 MySQL database
[ ] Update rfamweb_local.conf (fields ebi_search and connect_info)
[ ] Verify OY VMs directly before repeating for PG
[ ] Move.release FTP directory to release
[ ] Update CURRENT FTP symlink
[ ] Update Public MySQL database using Sequel Ace
[ ] Load new data into a new database called rfam_xx_x
[ ] Rename the Rfam database to rfam_xx_y
[ ] Rename the rfam_xx_x database to Rfam
[ ] Delete old databases to save space on PUB
[ ] EBI cmscan search - check that it automatically picks up the new covariance models from the production FTP location
[ ] Update RNAcentral sequence search
[ ] update rfam_local.py config to latest db
Announce
[ ] Publish blog post with the Rfam tag
[ ] Post on Twitter
Post Announce
[ ] Close GitHub release project
[ ] Review GitHub issues
[ ] Backup old text search files - tar.gz folder in search_dumps
[ ] Make sure production website uses production search index
[ ] Update
Rfam taxonomy
and create a new GitHub release
[ ] Create a release checklist for the next release
Data updates
Update FTP archive
Pre Announce
Announce
Post Announce