This repository provides a set of tools related to the Rfam production pipeline. The collection includes script for data export, database processing, visualisation and validation, as well as detailed Rfam release documentation.
build container
docker build -t rfam-production .
open bash interactive shell
docker run -v `pwd`:/rfam/rfam-production -it rfam-production bash
run a command inside the container
docker run -v `pwd`:/rfam/rfam-production -it rfam-production python scripts/export/rfam_xml_dumper.py --out /rfam --type C
# install Python dependencies
pip install -r requirements.txt
# set up Python path
export PYTHONPATH=/path/to/the/project
# create and edit configuration file (excluded from version control)
cp config/rfam_local_template.py config/rfam_local.py
Feel free to submit an issue if you have any questions or suggestions.