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The Biological Roles of microRNAs in Drosophila Development
PMID: 39057224
Check annotation of miRNAs mentioned have been curated and potential template for GO-CAMs for general processing
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As requested by @JillAshey , here are the miRNA FASTA and gff files for all three species. (
[Apul FASTA](https://github.com/urol-e5/deep-dive/blob/main/D-Apul/output/13.2.1-Apul-sRNAseq-ShortStack…
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Hi,
Is there a way to include variants in RNA genes without getting all non-coding variants in regular protein-coding genes (or intronic variants in protein-coding genes that are also ncRNA variant…
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There are quite a few transcripts annotated as 'ncRNA'. However according to the ID mapping, it seems they could be annotated further as tRNA, rRNA etc.
```
$ zcat homo_sapiens.GRCh38.gff3.gz | g…
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Hi Ryan,
Great tool! I've been using it for a couple of side projects and seems to work great (python3 version). However, now I want to submit some human cytomegalovirus genomes (HCMV) and I found …
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Hello,
I was wondering if it is more appropriate to use the v1 standard kallisto index https://github.com/pachterlab/kallisto-transcriptome-indices/releases for bulk RNA seq data compared to an ind…
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Definition: Has a separate non-coding transcript that hosts non-coding microRNAs such as like MIRs.
I am not sure where this might fit in the SO or indeed whether you may have this concept already pre…
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Many lines are missing and some canonical genes now are classified as "RNA".
- AGAT version (v1.4.0)
- AGAT installation/use [Conda]
- OS: [Ubuntu]
I wanted to fix the gtf file that I received…
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If I select "ncRNA" in amigo it should also include the subtypes of ncRNA, however, it doesn't use the closure
(low priority as the type hierarchy is basically flat other than ncRNA and it's easy e…
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Hi,
when running prokka 1.14.6 with --rfam 0 ncRNAs are found. With prokka 1.13 several were detected and running the cmscan code from the logfile separately also resulted in the detection of sever…