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RNAcentral
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rnacentral-import-pipeline
RNAcentral data import pipeline
Apache License 2.0
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Tarbase update
#209
afg1
closed
22 hours ago
3
Pylint alerts corrections as part of an intervention experiment 1853
#208
evidencebp
closed
23 hours ago
2
Pylint alerts corrections as part of an intervention experiment
#207
evidencebp
opened
1 week ago
8
Remove old text mining code
#206
blakesweeney
opened
4 months ago
1
Blake/rna 532 import mirtrondb
#205
blakesweeney
opened
5 months ago
0
Blake/rna 533 fix genome coordinate export
#204
blakesweeney
closed
5 months ago
0
Bump pymysql from 1.0.3 to 1.1.1
#203
dependabot[bot]
opened
6 months ago
0
Bump requests from 2.28.2 to 2.32.0
#202
dependabot[bot]
opened
6 months ago
0
Bump tqdm from 4.65.0 to 4.66.3
#201
dependabot[bot]
opened
6 months ago
0
Bump idna from 3.4 to 3.7
#200
dependabot[bot]
opened
7 months ago
0
Bump certifi from 2022.12.7 to 2023.7.22
#199
dependabot[bot]
opened
8 months ago
0
Bump urllib3 from 1.26.15 to 1.26.18
#198
dependabot[bot]
opened
8 months ago
0
Bump requests from 2.28.2 to 2.31.0
#197
dependabot[bot]
closed
6 months ago
1
Bump zerocopy from 0.7.11 to 0.7.32
#196
dependabot[bot]
opened
8 months ago
0
Release 24 merge into main
#195
afg1
closed
8 months ago
0
Improve how new IDs are submitted to LitScan
#194
carlosribas
closed
8 months ago
1
Bump mio from 0.8.9 to 0.8.11
#193
dependabot[bot]
opened
8 months ago
2
Fix GPI export
#192
blakesweeney
closed
8 months ago
0
Rediportal export
#191
afg1
closed
9 months ago
0
Blake/rna 389 validate all usages of rnc sequence regions in the piepline
#190
blakesweeney
closed
9 months ago
1
The genome browser pop-up should show the description (RNA-369)
#189
carlosribas
closed
9 months ago
2
Removes updating the rnc_sequence_regions.providing_databases column
#188
blakesweeney
closed
9 months ago
0
Remove project field
#187
blakesweeney
closed
9 months ago
0
Do not extract the experiment field
#186
blakesweeney
closed
9 months ago
0
Write URL to it's own column
#185
blakesweeney
closed
9 months ago
0
Do not update is composite
#184
blakesweeney
closed
9 months ago
0
Import new tmRNA data
#183
blakesweeney
closed
9 months ago
1
Public update
#182
afg1
closed
9 months ago
1
Document database
#181
blakesweeney
closed
9 months ago
0
Remove unneeded Make file commands and file
#180
blakesweeney
closed
9 months ago
0
Cleanup rnc accession columns
#179
blakesweeney
closed
9 months ago
1
Update dev branch
#178
carlosribas
closed
10 months ago
0
Merge dev into main for release 23
#177
afg1
closed
1 year ago
0
Do not use GeneCards or MalaCards as a source
#176
blakesweeney
closed
1 year ago
1
RNA-285: Export more mirbase ids
#175
blakesweeney
closed
1 year ago
0
Check status of pybedtools in pip
#174
afg1
opened
1 year ago
0
Import rediportal data
#173
blakesweeney
opened
1 year ago
0
Produce species level fasta files
#172
blakesweeney
opened
1 year ago
0
Validate expression atlas mappings
#171
blakesweeney
opened
1 year ago
0
Release 22
#170
afg1
closed
1 year ago
1
Import REDIportal data
#169
blakesweeney
opened
1 year ago
0
Merge Changes for slurm into dev
#168
afg1
closed
1 year ago
0
Bump setuptools from 65.5.0 to 65.5.1
#167
dependabot[bot]
closed
9 months ago
1
Bump certifi from 2022.6.15 to 2022.12.7
#166
dependabot[bot]
closed
9 months ago
1
Ensure precompute uses all expected xrefs
#165
blakesweeney
opened
1 year ago
0
Delete text mining data
#164
carlosribas
closed
1 year ago
1
Python update & enable poetry
#163
afg1
closed
1 year ago
1
Removing taxonomy information from rnc_accessions
#162
afg1
closed
9 months ago
2
Migrate to using rnc_taxonomy instead of rnc_accession columns
#161
blakesweeney
opened
2 years ago
3
Bump joblib from 1.0.1 to 1.2.0
#160
dependabot[bot]
closed
2 years ago
0
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