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RNAcentral
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rnacentral-import-pipeline
RNAcentral data import pipeline
Apache License 2.0
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Bump py from 1.9.0 to 1.11.0
#159
dependabot[bot]
closed
2 years ago
0
Bump regex from 1.4.3 to 1.5.5
#158
dependabot[bot]
closed
2 years ago
0
Decide what to do about circRNA and sgRNA
#157
afg1
opened
2 years ago
0
Fix poetry
#156
afg1
closed
1 year ago
1
Build using poetry
#155
blakesweeney
closed
9 months ago
0
Import sequences from IntAct
#154
blakesweeney
opened
2 years ago
0
R2dt rescan
#153
blakesweeney
opened
2 years ago
0
Do not use common names from rnc_accessions
#152
blakesweeney
closed
2 years ago
0
Update master
#151
blakesweeney
closed
2 years ago
0
Validate changes to 2D diagrams
#150
blakesweeney
opened
2 years ago
0
Rescan all sequences
#149
blakesweeney
opened
2 years ago
0
Delete all entries in rnc_secondary_structure
#148
blakesweeney
opened
2 years ago
3
Delete all entries in pipeline_tracking_travler
#147
blakesweeney
closed
2 years ago
3
Update the rnc_secondary_structure_layout_models table
#146
blakesweeney
closed
1 year ago
1
Openssl cleanups
#145
blakesweeney
closed
2 years ago
0
Run the weekly update database import with tower
#144
blakesweeney
opened
2 years ago
0
Configure a medium sized analysis run
#143
blakesweeney
opened
2 years ago
0
Configure nextflow/patch pipeline to only run 1000 sequences against r2dt
#142
blakesweeney
opened
2 years ago
0
Run limited r2dt analysis pipeline using nextflow tower
#141
blakesweeney
opened
2 years ago
0
Check if reporting is useful
#140
blakesweeney
opened
2 years ago
0
R21 postrelease patching
#139
afg1
closed
2 years ago
0
Auto remove obsoleted GO terms
#138
afg1
opened
2 years ago
0
Improve handing of expression data
#137
afg1
closed
1 year ago
1
Import more pdbe
#136
blakesweeney
closed
2 years ago
1
Track database update schedule in rnc_database
#135
blakesweeney
opened
2 years ago
0
Delete rnc_coordinates
#134
blakesweeney
closed
1 year ago
0
Improve batch lookup of GO terms
#133
blakesweeney
opened
2 years ago
0
Changes in pipeline to account for multiple assemblies
#132
afg1
opened
2 years ago
1
Fix duplicated links for some databases
#131
blakesweeney
opened
2 years ago
0
Upper case all sequences when importing
#130
blakesweeney
closed
2 years ago
3
Import GTEx data
#129
blakesweeney
opened
2 years ago
0
Fetch mouse phenotype data
#128
blakesweeney
opened
2 years ago
0
Import NPInter data
#127
blakesweeney
opened
2 years ago
0
Validate GO annotation data for URS000078D33A/7227
#126
blakesweeney
closed
2 years ago
1
Bump thread_local from 1.1.0 to 1.1.4
#125
dependabot[bot]
closed
2 years ago
2
Fix taxonomy & number of species
#124
afg1
closed
2 years ago
1
Import lncRNA Atlas
#123
blakesweeney
closed
2 years ago
1
Consider importing CLC2 lncRNA data
#122
blakesweeney
opened
2 years ago
2
Import newer MODOMICS data
#121
blakesweeney
opened
2 years ago
0
Bump crossbeam-utils from 0.8.1 to 0.8.8
#120
dependabot[bot]
closed
2 years ago
2
Fix spelling mistake in some sequences
#119
blakesweeney
closed
2 years ago
2
Fix off by one error in miRNA data
#118
blakesweeney
opened
2 years ago
1
Fix bed coordinate issues
#117
blakesweeney
opened
2 years ago
0
Import EVLncRNAs database
#116
blakesweeney
opened
2 years ago
0
Update LncBook data
#115
blakesweeney
closed
2 years ago
1
Dev
#113
blakesweeney
closed
2 years ago
0
Rfam2rnacentral
#112
blakesweeney
closed
2 years ago
0
Import ribovision
#111
blakesweeney
closed
2 years ago
1
GitHub actions
#110
blakesweeney
closed
2 years ago
1
Update mirgenedb data
#109
blakesweeney
closed
2 years ago
0
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