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RNAcentral
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rnacentral-import-pipeline
RNAcentral data import pipeline
Apache License 2.0
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Export high quality set of GO annotations
#108
blakesweeney
opened
3 years ago
0
Export high quality set of Rfam annotations
#107
blakesweeney
opened
3 years ago
0
Ensure we handle removing GO terms from quickgo
#106
blakesweeney
opened
3 years ago
0
Explore linking to complex portal
#105
blakesweeney
opened
3 years ago
0
Get UniProt descriptions
#104
carlosribas
opened
3 years ago
0
Gene type 'ncRNA'
#103
mumichae
opened
3 years ago
1
Difference between 'databases' and 'providing_databases'
#102
mumichae
closed
3 years ago
1
tRNAs from LncBook
#101
mumichae
opened
3 years ago
2
Gene definition
#100
mumichae
closed
3 years ago
6
Reconginize more assembly names
#99
blakesweeney
opened
3 years ago
0
Meaning of gene sources 'alignment' and 'expert-database'
#98
mumichae
closed
3 years ago
2
Better lncRNA terms
#97
blakesweeney
opened
3 years ago
0
Gene types
#96
mumichae
closed
3 years ago
1
Check if external software exists
#95
blakesweeney
closed
2 years ago
0
Migrate export.nf
#94
blakesweeney
closed
2 years ago
0
Migrate analyze.nf
#93
blakesweeney
closed
2 years ago
0
Migrate import-data.nf
#92
blakesweeney
closed
2 years ago
0
Test building singularity images
#91
blakesweeney
closed
2 years ago
0
Setup required paths
#90
blakesweeney
closed
2 years ago
0
Extract database version when parsing files
#89
blakesweeney
opened
3 years ago
0
Link to ribovision
#88
blakesweeney
closed
2 years ago
0
Import psicquic data
#87
blakesweeney
closed
2 years ago
0
Update Rfam GO terms each release
#86
blakesweeney
opened
3 years ago
1
Figure out why sequence export and search export disagree
#85
blakesweeney
opened
3 years ago
0
Import linkage to fantom5/6
#84
blakesweeney
opened
3 years ago
0
Import linkage to expression atlas
#83
blakesweeney
closed
2 years ago
3
Import linkage to lncAtlas
#82
blakesweeney
opened
3 years ago
0
Figure out why GENCODE is separate from Ensembl/GENCODE
#81
blakesweeney
closed
2 years ago
0
Add link from accession to rnc_sequence_regions
#80
blakesweeney
opened
3 years ago
0
Add paper to NKILA
#79
blakesweeney
closed
2 years ago
1
Use results of CPAT analysis
#78
blakesweeney
closed
3 years ago
0
Analyse sequences to see if they are protein coding
#77
blakesweeney
opened
3 years ago
0
Bump urllib3 from 1.26.2 to 1.26.5
#76
dependabot[bot]
closed
2 years ago
1
Update pdbe import
#75
blakesweeney
closed
3 years ago
0
Bump py from 1.9.0 to 1.10.0
#74
dependabot[bot]
closed
2 years ago
2
Bump urllib3 from 1.26.2 to 1.26.4
#73
dependabot[bot]
closed
3 years ago
1
Bump lxml from 4.6.2 to 4.6.3
#72
dependabot[bot]
closed
3 years ago
1
Bump urllib3 from 1.26.2 to 1.26.3
#71
dependabot[bot]
closed
3 years ago
1
Update ZFIN file location
#70
AntonPetrov
closed
3 years ago
0
Bump lxml from 4.2.1 to 4.6.2
#69
dependabot[bot]
closed
3 years ago
1
Revert "Gtrnadb layouts"
#68
blakesweeney
closed
4 years ago
0
Gtrnadb layouts
#67
blakesweeney
closed
4 years ago
0
Lsu secondary structures
#66
blakesweeney
closed
5 years ago
0
Sequence search export
#65
blakesweeney
closed
5 years ago
0
Use new auto traveler
#64
blakesweeney
closed
5 years ago
0
Index publication text
#63
blakesweeney
closed
5 years ago
0
Compute secondary structures
#62
blakesweeney
closed
5 years ago
0
Import ensembl compara
#61
blakesweeney
closed
5 years ago
0
Simplify fetching ensembl data
#60
blakesweeney
closed
6 years ago
0
Bug fix gff export
#59
blakesweeney
closed
6 years ago
0
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