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Rfam / rfam-production

Rfam production pipeline
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Create a Clans file for use with Infernal #7

Closed AntonPetrov closed 7 years ago

AntonPetrov commented 8 years ago

The file can be used for running clan competition within cmscan.

Example file

CL00001 tRNA cyano_tmRNA tRNA-Sec mt-tmRNA
 +CL00003 Metazoa_SRP Bacteria_small_SRP Fungi_SRP Dictyostelium_SRP Bacteria_large_SRP Plant_SRP Protozoa_SRP Archaea_SRP
 +CL00004 Telomerase-cil
 +CL00008 U54 snoU54
 +CL00010 Hammerhead_3 Hammerhead_1 Hammerhead_HH9 Hammerhead_II Hammerhead_HH10

The file should be made available on the FTP site as part of the release process. Also such files should be added to past Rfam releases on the FTP (where applicable).

See this Infernal commit for more info.

AntonPetrov commented 7 years ago

Example file: ftp://ftp.ebi.ac.uk/pub/databases/Rfam/CURRENT/Rfam.clanin