A workshop for microbial metagenomics and bioinformatics practice on the euler server of ETH Zurich
91_otus.fasta.gz --- 91%-identity OTUs of 16S rRNA gene Greengenes Database http://greengenes.secondgenome.com/downloads
SARG_20170328.fasta.gz --- Structure antibiotic resistance gene database (ARDB) downloaded from https://smile.hku.hk/SARGs
D10.R1_1.fq.gz --- shot-gun metagenomes with paired end reads 1 for sample D10.R1
D10.R1_2.fq.gz --- shot-gun metagenomes with paired end reads 2 for sample D10.R1
D10.R2_1.fq.gz --- shot-gun metagenomes with paired end reads 1 for sample D10.R2
D10.R2_2.fq.gz --- shot-gun metagenomes with paired end reads 2 for sample D10.R2
N50_GC.py --- a python script for calculating N50, average, minimum, and maximum length of sequences in multiple fastas
submit.blastp.jobarrays.cmds.lsf --- a lsf file for bsub submission of a blast jobarrays to server
calc.coverage.in.bam.depth.pl (copyright: Mads Albertsen) --- a perl script for calculating coverage from the depth profile of a sorted bam file (sorted by samtools)